CF832284

Overview
NameCF832284
Unique NameCF832284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:366..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.631e-23
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   91 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.631e-23
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   91 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.631e-23
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   91 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.631e-23
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   91 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.185e-21
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            NYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   92 NYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.185e-21
Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            NYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   92 NYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.350e-20
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   92 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.350e-20
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   92 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.009e-20
Identity = 45/52 (86.54%), Postives = 51/52 (98.08%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Sbjct:   92 NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.166e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   92 NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
The following BLAST results are available for this feature:
BLAST of CF832284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS23_FRAAN8.631e-23100.0040S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES8.631e-23100.0040S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH8.631e-23100.0040S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH8.631e-23100.0040S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_DROME6.185e-2190.3840S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_DERVA6.185e-2190.3840S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_SPOFR2.350e-2088.4640S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA2.350e-2088.4640S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_LUMRU4.009e-2086.5440S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_RAT1.166e-1986.5440S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832284 ID=CF832284; Name=CF832284; organism=Citrus sinensis; type=EST; length=354bp
TTTTTTTTTTTTTTCACAAACCACTCAAGTAGAAGAGACAGATCCCTTTT
TACTAATAGTCTCAACAGAGGGAAAAAAACCAAAAACTTCTCTCAACAGC
AGTACATGATAAAGGAAAACAGTAATCAACGGGGATTAATGAAAATAAAG
TGCTAAAAAAAGAAAACATGGTGAAGTATCTTGAATCAGGAGTTTAGGAT
CTTGGTTTCTCCTTCTTCTCCTTGAAGAGGGCCAGAAGAGACACGCCTGA
AACCTTGACAACCTTAAATCTAACACCAGGAATATCTCCCACAGCATGCC
CCTTTCGACCAAATCCTGCAATAAGTACCTCGTCATTTTCTTCAATGTAG
TTCA
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