CF832287

Overview
NameCF832287
Unique NameCF832287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:365..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.018e-21
Identity = 50/53 (94.34%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LNYI  NDEVLIAGFGR GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   90 LNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.018e-21
Identity = 50/53 (94.34%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LNYI  NDEVLIAGFGR GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   90 LNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.018e-21
Identity = 50/53 (94.34%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LNYI  NDEVLIAGFGR GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   90 LNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.018e-21
Identity = 50/53 (94.34%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LNYI  NDEVLIAGFGR GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   90 LNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.746e-19
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LNYI  NDEVL+AGFGR GHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   91 LNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.746e-19
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LNYI  NDEVL+AGFGR GHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   91 LNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.183e-18
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I  NDEVL+AGFGR GHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   91 LNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.183e-18
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I  NDEVL+AGFGR GHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   91 LNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.724e-18
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I  NDEVL+AGFGR GHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Sbjct:   91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143
[Close]
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.084e-17
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I  NDEVL+AGFGR GHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
The following BLAST results are available for this feature:
BLAST of CF832287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RS23_FRAAN8.018e-2194.3440S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES8.018e-2194.3440S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH8.018e-2194.3440S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH8.018e-2194.3440S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_DROME5.746e-1984.9140S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_DERVA5.746e-1984.9140S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_SPOFR2.183e-1883.0240S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA2.183e-1883.0240S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_LUMRU3.724e-1881.1340S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_RAT1.084e-1781.1340S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832287 ID=CF832287; Name=CF832287; organism=Citrus sinensis; type=EST; length=358bp
TTGAACTACATCTATTAAAATGACGAGGTACTTATTGCAGGATTTGGTCG
AAACGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCA
AGGTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAA
CCAAGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTT
TAGCACTTTATTTTCATTAATCCCCGTTGATTACTGTTTTCCTTTATCAT
GTACTGCTGTTGAGAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTAT
TAGTAAATTAGTATCTGTCTCTTCTACTTGAGTGGTTTGTTGAAAAAAAA
AAAAAAAA
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