CF832328

Overview
NameCF832328
Unique NameCF832328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:974..1810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.786e-88
Identity = 153/193 (79.27%), Postives = 169/193 (87.56%), Query Frame = -1
Query:  259 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 837
            Y CDMLAYQDTLYVHS RQF+ +C+IAGTVDFIFGNAAAV QNCDIHAR+PN  Q+NMVTAQGR DPNQNTGIVIQK RIGATSDL  V+GSF TYLGRPWK YSRTV+MQS I+DVI+PAGW+EW GNFAL+TLFY E+QN GAGA TS RVKW  F+VITSA EAQ +T  +FIAGS+WLGSTGFPFSLGL
Sbjct:  392 YNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.332e-88
Identity = 152/193 (78.76%), Postives = 170/193 (88.08%), Query Frame = -1
Query:  259 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 837
            Y CDMLAYQDTLYVHS RQF+ +C+IAGTVDFIFGNAAAV QNCDIHAR+PN  Q+NMVTAQGR DPNQNTGIVIQK RIGATSDL  V+GSF TYLGRPWK YSRTV+MQS I+D+I+PAGW+EW GNFAL+TLFY E+QN+GAGA TS RVKW  F+VITSA EAQ +T  +FIAGS+WLGSTGFPFSLGL
Sbjct:  392 YNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 6.785e-88
Identity = 152/193 (78.76%), Postives = 164/193 (84.97%), Query Frame = -1
Query:  259 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 837
            YRCDMLAYQDTLYVHS RQF+  C++AGTVDFIFGN AAVFQ+CDIHARRP   Q+NMVTAQGR DPNQNTGIVIQKCRIGATSDL  V+ SF TYLGRPWK YSRTV+MQS I+DVI PAGW+EW+GNFALDTLFY EY NTGAGA TS RVKW   KVITS+ EAQ YT   FIAG +WL STGFPFSLGL
Sbjct:  391 YRCDMLAYQDTLYVHSNRQFFVQCLVAGTVDFIFGNGAAVFQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLRPVQKSFPTYLGRPWKEYSRTVIMQSSITDVIQPAGWHEWNGNFALDTLFYGEYANTGAGAPTSGRVKWKGHKVITSSTEAQAYTPGRFIAGGSWLSSTGFPFSLGL 583          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 1.280e-86
Identity = 152/193 (78.76%), Postives = 163/193 (84.46%), Query Frame = -1
Query:  259 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 837
            Y CDMLAYQDTLYVHS RQF+  C+IAGTVDFIFGNAA V Q+CDIHARRPN  Q+NMVTAQGR DPNQNTGIVIQKCRIGATSDL +VKGSF TYLGRPWK YS+TV+MQS ISDVI P GW EW+G FAL+TL Y EY NTGAGA T+NRVKW  FKVIT+AAEAQ YTA  FI G  WL STGFPFSLGL
Sbjct:  400 YNCDMLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIHARRPNSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLQSVKGSFPTYLGRPWKEYSQTVIMQSAISDVIRPEGWSEWTGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSSTGFPFSLGL 592          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 5.944e-84
Identity = 147/193 (76.17%), Postives = 159/193 (82.38%), Query Frame = -1
Query:  259 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 837
            Y+CDM AYQDTLYVHS RQF+  C I GTVDFIFGNAAAV Q+CDI+ARRPN  Q+NMVTAQGR DPNQNTGIVIQ CRIG TSDLLAVKG+F TYLGRPWK YSRTV+MQSDISDVI P GW+EWSG+FALDTL Y EY N G GA T+NRVKW  +KVITS  EAQ +TA  FI G  WL STGFPFSL L
Sbjct:  395 YQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISDVIRPEGWHEWSGSFALDTLTYREYLNRGGGAGTANRVKWKGYKVITSDTEAQPFTAGQFIGGGGWLASTGFPFSLSL 587          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 5.032e-83
Identity = 146/193 (75.65%), Postives = 162/193 (83.94%), Query Frame = -1
Query:  259 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 837
            YRCD+LAYQD+LYVHS RQF+ +C IAGTVDFIFGNAA V Q+CDIHARRP   Q+NMVTAQGR DPNQNTGIVIQK RIGATSDL  V+ SF TYLGRPWK YSRTVVMQS I++VINPAGW+ W GNFALDTL+Y EYQNTGAGA TS RV W  FKVITS+ EAQ +T  +FIAG +WL +T FPFSLGL
Sbjct:  127 YRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.019e-67
Identity = 118/193 (61.14%), Postives = 148/193 (76.68%), Query Frame = -1
Query:  259 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 837
            YRC    YQDTLYVHS RQFY  C I GTVDFIFGNAA V QNC+I AR+P PN+ N +TAQGR DPNQ+TGI+I  CR+ A SDL  V+ S +T+LGRPWK+YSRTV +++ +  +INPAGW EWSG+FAL+TL+YAEY NTG G+ T+NRVKW  + V+TS ++   +T  NFIAG++WL +T  PF+ GL
Sbjct:  319 YRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.921e-66
Identity = 114/193 (59.07%), Postives = 143/193 (74.09%), Query Frame = -1
Query:  259 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 837
            Y+C  + YQDTLYVHSLRQFY+ C + GT+DFIFGNAAAV Q C+++AR+PN NQ+N+ TAQGRDDPNQNTGI I  C++ A +DL+ V  SF+TYLGRPWK YSRTV + S +  +I+PAGW EWSG+FAL TL+Y EY+NTG G++T+ RV W  + V T+  E   +T  NFI GS WL S   P  L L
Sbjct:  128 YQCSFVGYQDTLYVHSLRQFYSECDVYGTIDFIFGNAAAVLQKCNLYARKPNENQKNIFTAQGRDDPNQNTGISILNCKVAAAADLIPVLSSFKTYLGRPWKEYSRTVFLLSQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAVTTNETEVIQFTVGNFIQGSQWLTSYNIPVYLNL 320          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 2.509e-66
Identity = 120/188 (63.83%), Postives = 138/188 (73.40%), Query Frame = -1
Query:  271 RCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPF 834
            RC + AYQDTLY H+LRQFY    I GTVDFIFGN+A VFQNCDI AR P   Q+NM+TAQGR+D NQNT I IQKC+I A+SDL  VKGS +T+LGRPWK YSRTV+MQS I + I+PAGW+ W G FAL TL+Y EY NTG GADTS RV W  FKVI  + EA+ +T A  I G  WL  TG  F
Sbjct:  366 RCRIDAYQDTLYTHTLRQFYRDSYITGTVDFIFGNSAVVFQNCDIVARNPGAGQKNMLTAQGREDQNQNTAISIQKCKITASSDLAPVKGSVKTFLGRPWKLYSRTVIMQSFIDNHIDPAGWFPWDGEFALSTLYYGEYANTGPGADTSKRVNWKGFKVIKDSKEAEQFTVAKLIQGGLWLKPTGVTF 553          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 8.071e-65
Identity = 118/193 (61.14%), Postives = 144/193 (74.61%), Query Frame = -1
Query:  259 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 837
            Y+C   AYQDTLYVHS RQFY  C + GTVDFIFGNAAAV QNC+I ARRP  ++ N +TAQGR DPNQNTGI+I   R+ A SDL  V GS +TYLGRPW++YSRTV M++ +  +I+P GW EW GNFAL TLFYAE+QNTG GA TS RV W  F+V+ SA+EA  +T   F+AG +W+ S+  PF+ GL
Sbjct:  321 YQCSFEAYQDTLYVHSNRQFYRDCDVYGTVDFIFGNAAAVLQNCNIFARRPR-SKTNTITAQGRSDPNQNTGIIIHNSRVTAASDLRPVLGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGSWIPSS-VPFTSGL 511          
The following BLAST results are available for this feature:
BLAST of CF832328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PME3_CITSI1.786e-8879.27Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI2.332e-8878.76Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC6.785e-8878.76Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME3_ARATH1.280e-8678.76Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH5.944e-8476.17Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME_DAUCA5.032e-8375.65Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME2_CITSI1.019e-6761.14Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME_ACTDE1.921e-6659.07Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME18_ARATH2.509e-6663.83Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME17_ARATH8.071e-6561.14Probable pectinesterase/pectinesterase inhibitor 1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01L02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832328 ID=CF832328; Name=CF832328; organism=Citrus sinensis; type=EST; length=837bp
TTTTTTTTTTTTTTAAGCTCAATCAGCAGTAGTACTTTAATTTCAGGGAG
CAACGCATGCAATCATCATCCATAATTCCCTGCTGAGATAAATCTCTTAC
ATCAAACTCGAGCAGACTCACACAAATAAAATCATCAAACTTGAGCAGAC
TCGCACAAATAAAATCATCAAACATCTAGCGGAGCAAGTGTTATTTATTG
CTAGCTAGGACATTTATAGGCAGCTGAGCTTAGCTATGGCCTATGTATGA
CAAATTCACAGACCAAGAGAGAAAGGAAACCCAGTGGAGCCAAGCCAAGT
ACTCCCTGCAATAAAATTCGCAGCTGTATAAGTTTGAGCCTCAGCTGCAC
TAGTAATCACCTTGAATGTGCTCCATTTCACCCTATTCGATGTGTCAGCA
CCAGCACCTGTGTTTTGATACTCTGCATAAAACAATGTGTCCAATGCAAA
ATTCCCACTCCATTCATACCACCCAGCTGGGTTAATAACATCACTTATAT
CAGATTGCATCACAACAGTCCTCGAGTACCGCTTCCATGGCCTGCCTAAA
TATGTCTCAAAGCTGCCCTTTACAGCAAGTAAATCTGATGTTGCACCAAT
CCTGCATTTTTGTATCACTATGCCTGTGTTCTGATTCGGGTCGTCGCGGC
CTTGTGCCGTGACCATGTTCCTTTGGTTTGGATTGGGGCGGCGAGCATGG
ATGTCACAGTTTTGGAACACAGCTGCTGCATTTCCGAAAATGAAGTCCAC
TGTGCCTGCTATAATGCAGCTGGTATAAAATTGGCGAAGTGAGTGTACAT
AGAGAGTGTCTTGGTATGCTAGCATGTCACACCTATA
back to top