CF832360

Overview
NameCF832360
Unique NameCF832360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832360 vs. ExPASy Swiss-Prot
Match: HDDC2_HUMAN (HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.794e-41
Identity = 85/160 (53.12%), Postives = 116/160 (72.50%), Query Frame = -2
Query:  214 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITSMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 687
            + FL L  +LK   R GWV RNV  PES++DHMYRM +M +++ D   +++D+C+++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL +  R KE+ ELW EYE  S+AEAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   18 LQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKD-DRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKF 175          
BLAST of CF832360 vs. ExPASy Swiss-Prot
Match: HDDC2_BOVIN (HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.818e-41
Identity = 83/160 (51.88%), Postives = 115/160 (71.88%), Query Frame = -2
Query:  214 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITSMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 687
            + FL L  +LK   R GWV RNV  PES++DHMYRM +M L+  D   +++D+C+++A+VHD+AE IVGDI P+D +P+EEK +RE EA+  + +LL +  + KE+ ELW EYE  S+AEAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   19 LQFLRLVGQLKRVPRTGWVYRNVQKPESVSDHMYRMAVMALVTKD-EHLNKDRCVRLALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLPEDLQ-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 176          
BLAST of CF832360 vs. ExPASy Swiss-Prot
Match: HDDC2_MOUSE (HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.905e-41
Identity = 85/158 (53.80%), Postives = 113/158 (71.52%), Query Frame = -2
Query:  214 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITSMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 681
            FL L  +LK   R GWV RNV  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL +  R KE+ ELW EYE  S+ EAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   15 FLRLVGQLKRVPRTGWVYRNVEKPESVSDHMYRMAVMAMVTRD-DRLNKDRCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 170          
BLAST of CF832360 vs. ExPASy Swiss-Prot
Match: HDDC2_DICDI (HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.384e-40
Identity = 94/187 (50.27%), Postives = 115/187 (61.50%), Query Frame = -2
Query:  163 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMG-------LIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITSMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYEN-----EQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRRK 687
            ++F  +C +LKT KR GWV   V  PES++DHMYRM +MG       LI  D   ID+ K IKMA+VHD+ E++VGD TP D I KEEK Q E+ AI  +   L  G   KEI +LW EYE+  T EA +VKDFDK EMILQA EYE      E    L+ FF ST GKF   L K+ A ++ S RK
Sbjct:    5 LEFFKICGKLKTLKRTGWVNHGVELPESVSDHMYRMAMMGMCLDKKELIGEDGKEIDKMKIIKMALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTL-SGEVGKEIFDLWQEYEDCKTNEALLVKDFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKFHHPLFKSLALQLESDRK 190          
BLAST of CF832360 vs. ExPASy Swiss-Prot
Match: HDDC2_DANRE (HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.772e-40
Identity = 82/160 (51.25%), Postives = 112/160 (70.00%), Query Frame = -2
Query:  214 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITSMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 687
            + F+ L  +LK   R GWV RN+  PES++DHMYRM +M L + DI  +++++C+K+A+VHD+AE IVGDI P+D + K EK +RE++A+  +  LL  G R KEI  LW EYE  S+ EAK+VK+ D  EMI+QA EYE  +GK   L+EFF ST GKF
Sbjct:    5 LQFMKLVGQLKRVPRTGWVYRNIKQPESVSDHMYRMSMMALTIQDI-SVNKERCMKLALVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKF 162          
BLAST of CF832360 vs. ExPASy Swiss-Prot
Match: YC0H_SCHPO (HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe GN=SPCC4G3.17 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.402e-38
Identity = 86/182 (47.25%), Postives = 120/182 (65.93%), Query Frame = -2
Query:  160 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITSMCKL---LGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGK-FQTELGKAWAAEIVSRRKK 687
            + FL    RLKTT R GW+   +  PESIADHMYRMG++ ++  D P I++++C+K+A+VHD+AE+IVGDITP + + KEEK + E EA+ S+ +    L    +A+EI EL++EYE  ST EAK VKD DK EMI Q  EYE +    KDL +F  + AGK  Q  L K W  +++  R++
Sbjct:   10 VPFLDCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLCND-PSINKERCLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEYESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEKDLSQF--TWAGKLIQHPLVKGWLNDVLQEREQ 188          
BLAST of CF832360 vs. ExPASy Swiss-Prot
Match: HDDC2_XENLA (HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.681e-37
Identity = 76/161 (47.20%), Postives = 112/161 (69.57%), Query Frame = -2
Query:  211 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITSMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKFQ 687
            + F+ L  +LK   R GW+ R V  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D I KEEK ++E+ A+  + +LL    +  E+ +LW EYE   TAEAK VK+ D+ EMILQA+EYE  + +   L++F+ STAGKF+
Sbjct:   15 LQFMKLVGQLKRVPRTGWIYRQVEKPESVSDHMYRMAVMAMLTEDRK-LNKDRCIRLALVHDMAECIVGDIAPADNIAKEEKHRKEKAAMEHLTQLLPDNLKT-EVYDLWEEYEHQFTAEAKFVKELDQCEMILQALEYEELEKRPGRLQDFYNSTAGKFK 173          
BLAST of CF832360 vs. ExPASy Swiss-Prot
Match: YB92_YEAST (HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae GN=YBR242W PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.834e-33
Identity = 75/179 (41.90%), Postives = 117/179 (65.36%), Query Frame = -2
Query:  160 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITSMCKLL---GQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQ--GKDLEEFFQSTAGKFQTELGKAWAAEIVSRRKK 681
            FL++  +LK  +R G++   +   ESI+DHMYR+ ++ +++ D   ++RDKC+++A+VHDIAE++VGDITP D I KEEK +RE E I  +C  L        AKEI + W+ YE  ++ EA+ VKD DK EM++Q  EYE E    K+ ++FF + A   +T+  K W +++V +R+K
Sbjct:   51 FLNVVQQLKIQRRTGYLDLGIKECESISDHMYRLSIITMLIKD-SRVNRDKCVRIALVHDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENVTSLEARYVKDIDKYEMLVQCFEYEREYKGTKNFDDFFGAVA-SIKTDEVKGWTSDLVVQRQK 227          
BLAST of CF832360 vs. ExPASy Swiss-Prot
Match: YGK1_YEAST (HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae GN=YGL101W PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 72/178 (40.45%), Postives = 113/178 (63.48%), Query Frame = -2
Query:  163 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITSMCKLL---GQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGKFQTELGKAWAAEIVSRRK 681
            FL++   LKT +R GWV   ++  ESI+DHMYRMGL  +++ D   +DR+KCI++A+VHD AE++VGDITP+D + KEEK +RE E +  +C+ +      + ++EI + W+ YE+ +  E + VKD DK EM++Q  EYE +    KDL++F        +T+  K W   ++  R+
Sbjct:   32 FLNIIQLLKTQRRTGWVDHGIDPCESISDHMYRMGLTTMLITD-KNVDRNKCIRIALVHDFAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESASREILDDWLAYEKQTCLEGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQFL-GAINDIKTDEVKKWTQSLLEDRQ 207          
The following BLAST results are available for this feature:
BLAST of CF832360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDDC2_HUMAN1.794e-4153.13HD domain-containing protein 2 OS=Homo sapiens GN=... [more]
HDDC2_BOVIN6.818e-4151.88HD domain-containing protein 2 OS=Bos taurus GN=HD... [more]
HDDC2_MOUSE8.905e-4153.80HD domain-containing protein 2 OS=Mus musculus GN=... [more]
HDDC2_DICDI3.384e-4050.27HD domain-containing protein 2 homolog OS=Dictyost... [more]
HDDC2_DANRE5.772e-4051.25HD domain-containing protein 2 OS=Danio rerio GN=h... [more]
YC0H_SCHPO5.402e-3847.25HD domain-containing protein C4G3.17 OS=Schizosacc... [more]
HDDC2_XENLA2.681e-3747.20HD domain-containing protein 2 OS=Xenopus laevis G... [more]
YB92_YEAST6.834e-3341.90HD domain-containing protein YBR242W OS=Saccharomy... [more]
YGK1_YEAST1.166e-3240.45HD domain-containing protein YGL101W OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01L22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832360 ID=CF832360; Name=CF832360; organism=Citrus sinensis; type=EST; length=754bp
TTTTTTTTTTTTTTTANCTTCTGCAAAATTTTGCTTATAACGAAATTAAC
AATTAGATCGAGGCAATAATTCAGGACAGGGATTGGCCCTCGAGTAACAT
GAACATGTCAAAAACTATCTGAAAATTTCAACTAATGTCTTCTTATGAAA
ATTAGTTCACTTTTTTCTCCTTGAAACAATTTCTGCAGCCCAAGCTTTCC
CCAATTCAGTCTGAAACTTTCCAGCAGTTGACTGGAAAAACTCCTCCAAA
TCCTTCCCTTGCTCATTTTCGTACTCTACCGCTTGAAGTATCATCTCCGC
CTTGTCAAAGTCCTTGACTATTTTGGCCTCTGCAGTAGAATTTTCTTCAT
ACTCCATCCACAACTCATCTATTTCCTTGGCTCTTGCCCCTTGTCCTAGT
AGTTTGCACATGGAGGTTATAGCTTCTCGCTCTCGTTGACTCTTTTCTTC
CTTTGGAATTCCATCTGAAGGGGTAATGTCCCCAACAATAGCTTCCGCAA
TGTCATGAACAATTGCCATCTTAATGCACTTGTCTCGGTCAATGCCAGGA
ATGTCAGCCATAATGAGACCCATCAATCCCATTCTGTACATATGATCAGC
TATCGATTCTGGATTGTTAACATTTCTCTTTACCCATCCTGCTCTCTTCG
TTGTCTTAAGGCGGTGGCAGAGGGAGAGGAAGTCGATCGCGGACGAAGAG
GAAGAAGAGAAAGCCGCGCCGTTAACAGATGAGGAAGCGAGAGGATTGAT
GCTG
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