CF832361

Overview
NameCF832361
Unique NameCF832361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832361 vs. ExPASy Swiss-Prot
Match: HDDC2_HUMAN (HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.172e-41
Identity = 85/160 (53.12%), Postives = 116/160 (72.50%), Query Frame = 3
Query:  225 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 698
            + FL L  +LK   R GWV RNV  PES++DHMYRM +M +++ D   +++D+C+++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL +  R KE+ ELW EYE  S+AEAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   18 LQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKD-DRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKF 175          
BLAST of CF832361 vs. ExPASy Swiss-Prot
Match: HDDC2_BOVIN (HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.255e-41
Identity = 83/160 (51.88%), Postives = 115/160 (71.88%), Query Frame = 3
Query:  225 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 698
            + FL L  +LK   R GWV RNV  PES++DHMYRM +M L+  D   +++D+C+++A+VHD+AE IVGDI P+D +P+EEK +RE EA+  + +LL +  + KE+ ELW EYE  S+AEAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   19 LQFLRLVGQLKRVPRTGWVYRNVQKPESVSDHMYRMAVMALVTKD-EHLNKDRCVRLALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLPEDLQ-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 176          
BLAST of CF832361 vs. ExPASy Swiss-Prot
Match: HDDC2_MOUSE (HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.078e-40
Identity = 85/158 (53.80%), Postives = 113/158 (71.52%), Query Frame = 3
Query:  231 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 698
            FL L  +LK   R GWV RNV  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL +  R KE+ ELW EYE  S+ EAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   15 FLRLVGQLKRVPRTGWVYRNVEKPESVSDHMYRMAVMAMVTRD-DRLNKDRCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 170          
BLAST of CF832361 vs. ExPASy Swiss-Prot
Match: HDDC2_DANRE (HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.402e-40
Identity = 82/160 (51.25%), Postives = 113/160 (70.62%), Query Frame = 3
Query:  225 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 698
            + F+ L  +LK   R GWV RN+  PES++DHMYRM +M L + DI  +++++C+K+A+VHD+AE IVGDI P+D + K EK +RE++A+ ++  LL  G R KEI  LW EYE  S+ EAK+VK+ D  EMI+QA EYE  +GK   L+EFF ST GKF
Sbjct:    5 LQFMKLVGQLKRVPRTGWVYRNIKQPESVSDHMYRMSMMALTIQDI-SVNKERCMKLALVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKF 162          
BLAST of CF832361 vs. ExPASy Swiss-Prot
Match: HDDC2_DICDI (HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.721e-38
Identity = 91/179 (50.84%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  225 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMG-------LIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYEN-----EQGKDLEEFFQSTAGKFQTELGKAWA 725
            ++F  +C +LKT KR GWV   V  PES++DHMYRM +MG       LI  D   ID+ K IKMA+VHD+ E++VGD TP D I KEEK Q E+ AI  +   L  G   KEI +LW EYE+  T EA +VKDFDK EMILQA EYE      E    L+ FF ST GKF   L K+ A
Sbjct:    5 LEFFKICGKLKTLKRTGWVNHGVELPESVSDHMYRMAMMGMCLDKKELIGEDGKEIDKMKIIKMALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTL-SGEVGKEIFDLWQEYEDCKTNEALLVKDFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKFHHPLFKSLA 182          
BLAST of CF832361 vs. ExPASy Swiss-Prot
Match: HDDC2_XENLA (HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.116e-37
Identity = 76/161 (47.20%), Postives = 113/161 (70.19%), Query Frame = 3
Query:  225 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKFQ 701
            + F+ L  +LK   R GW+ R V  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D I KEEK ++E+ A+ ++ +LL    +  E+ +LW EYE   TAEAK VK+ D+ EMILQA+EYE  + +   L++F+ STAGKF+
Sbjct:   15 LQFMKLVGQLKRVPRTGWIYRQVEKPESVSDHMYRMAVMAMLTEDRK-LNKDRCIRLALVHDMAECIVGDIAPADNIAKEEKHRKEKAAMEHLTQLLPDNLKT-EVYDLWEEYEHQFTAEAKFVKELDQCEMILQALEYEELEKRPGRLQDFYNSTAGKFK 173          
BLAST of CF832361 vs. ExPASy Swiss-Prot
Match: YC0H_SCHPO (HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe GN=SPCC4G3.17 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36
Identity = 86/172 (50.00%), Postives = 112/172 (65.12%), Query Frame = 3
Query:  225 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREA---ITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGK-FQTELGKAW 722
            + FL    RLKTT R GW+   +  PESIADHMYRMG++ ++  D P I++++C+K+A+VHD+AE+IVGDITP + + KEEK + E EA   IT     L    +A+EI EL++EYE  ST EAK VKD DK EMI Q  EYE +    KDL +F  + AGK  Q  L K W
Sbjct:   10 VPFLDCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLCND-PSINKERCLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEYESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEKDLSQF--TWAGKLIQHPLVKGW 178          
BLAST of CF832361 vs. ExPASy Swiss-Prot
Match: YGK1_YEAST (HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae GN=YGL101W PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.851e-33
Identity = 72/169 (42.60%), Postives = 110/169 (65.09%), Query Frame = 3
Query:  231 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL---GQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGKFQTELGKAW 722
            FL++   LKT +R GWV   ++  ESI+DHMYRMGL  +++ D   +DR+KCI++A+VHD AE++VGDITP+D + KEEK +RE E + Y+C+ +      + ++EI + W+ YE+ +  E + VKD DK EM++Q  EYE +    KDL++F        +T+  K W
Sbjct:   32 FLNIIQLLKTQRRTGWVDHGIDPCESISDHMYRMGLTTMLITD-KNVDRNKCIRIALVHDFAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESASREILDDWLAYEKQTCLEGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQFL-GAINDIKTDEVKKW 198          
BLAST of CF832361 vs. ExPASy Swiss-Prot
Match: YB92_YEAST (HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae GN=YBR242W PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.148e-32
Identity = 73/169 (43.20%), Postives = 110/169 (65.09%), Query Frame = 3
Query:  231 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL---GQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQ--GKDLEEFFQSTAGKFQTELGKAW 722
            FL++  +LK  +R G++   +   ESI+DHMYR+ ++ +++ D   ++RDKC+++A+VHDIAE++VGDITP D I KEEK +RE E I Y+C  L        AKEI + W+ YE  ++ EA+ VKD DK EM++Q  EYE E    K+ ++FF + A   +T+  K W
Sbjct:   51 FLNVVQQLKIQRRTGYLDLGIKECESISDHMYRLSIITMLIKD-SRVNRDKCVRIALVHDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENVTSLEARYVKDIDKYEMLVQCFEYEREYKGTKNFDDFFGAVA-SIKTDEVKGW 217          
The following BLAST results are available for this feature:
BLAST of CF832361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDDC2_HUMAN2.172e-4153.13HD domain-containing protein 2 OS=Homo sapiens GN=... [more]
HDDC2_BOVIN8.255e-4151.88HD domain-containing protein 2 OS=Bos taurus GN=HD... [more]
HDDC2_MOUSE1.078e-4053.80HD domain-containing protein 2 OS=Mus musculus GN=... [more]
HDDC2_DANRE2.402e-4051.25HD domain-containing protein 2 OS=Danio rerio GN=h... [more]
HDDC2_DICDI1.721e-3850.84HD domain-containing protein 2 homolog OS=Dictyost... [more]
HDDC2_XENLA1.116e-3747.20HD domain-containing protein 2 OS=Xenopus laevis G... [more]
YC0H_SCHPO1.611e-3650.00HD domain-containing protein C4G3.17 OS=Schizosacc... [more]
YGK1_YEAST4.851e-3342.60HD domain-containing protein YGL101W OS=Saccharomy... [more]
YB92_YEAST9.148e-3243.20HD domain-containing protein YBR242W OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01L22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832361 ID=CF832361; Name=CF832361; organism=Citrus sinensis; type=EST; length=726bp
GTGGACTGTTGCTCTGTAAATCATCGTCGTCACTCGTGTTCTTAATACCT
TCATTCACTTGCAATAATCTCAGATTCAACAAAACAATCGCCAATTCCAG
AGCTCATCGAATGGCCACGGAAGCTTCGTCGTCATCCTCATCCTTCACCG
GCGGTGACAGCATCAATCCTCTCGCTTCCTCATCTGTTAACGGCGCTGCT
TTCTCTTCTTCCTCTTCGTCCGCGATCGACTTCCTCTCCCTCTGCCACCG
CCTTAAGACAACGAAGAGAGCAGGATGGGTAAAGAGAAATGTTAACAATC
CAGAATCGATAGCTGATCATATGTACAGAATGGGATTGATGGGTCTCATT
ATGGCTGACATTCCTGGCATTGACCGAGACAAGTGCATTAAGATGGCAAT
TGTTCATGACATTGCGGAAGCTATTGTTGGGGACATTACCCCTTCAGATG
GAATTCCAAAGGAAGAAAAGAGTCAACGAGAGCGAGAAGCTATAACCTAC
ATGTGCAAACTACTAGGACAAGGGGCAAGAGCCAAGGAAATAGATGAGTT
GTGGATGGAGTATGAAGAAAATTCTACTGCAGAGGCCAAAATAGTCAAGG
ACTTTGACAAGGCGGAGATGATACTTCAAGCGGTAGAGTACGAAAATGAG
CAAGGGAAGGATTTGGAGGAGTTTTTCCAGTCAACTGCTGGAAAGTTTCA
GACTGAATTGGGGAAAGCTTGGGCTG
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