CF832362

Overview
NameCF832362
Unique NameCF832362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig646 contig Csv1_Contig646:191..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.901e-56
Identity = 106/143 (74.13%), Postives = 124/143 (86.71%), Query Frame = -3
Query:  279 MATVSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQA 707
            MATV GQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGLAN+KTVTIQ   KD +VVLAT KTKKQNKP   ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALARLSA+++ L+V+K G K+RNRQA
Sbjct:    1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143          
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.177e-55
Identity = 105/143 (73.43%), Postives = 122/143 (85.31%), Query Frame = -3
Query:  279 MATVSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQA 707
            MATV GQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGLAN+KTVTIQ  GKD  VVL T KTK+QNKP   ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+K G K+RNRQA
Sbjct:    1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143          
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 49/142 (34.51%), Postives = 79/142 (55.63%), Query Frame = -3
Query:  273 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 698
            +S  L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    1 MSAHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135          
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 49/142 (34.51%), Postives = 79/142 (55.63%), Query Frame = -3
Query:  273 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 698
            +S  L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    1 MSAHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVMVKRKRTRPTK 135          
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 49/142 (34.51%), Postives = 79/142 (55.63%), Query Frame = -3
Query:  273 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 698
            +S  L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    1 MSAHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVMVKRKPSRPTK 135          
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 55/136 (40.44%), Postives = 77/136 (56.62%), Query Frame = -3
Query:  309 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTI--QPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQV----ADNYYRPDLKKAALARLSAVNRSLKVSK 698
            +S  L W I++ NN FLVK   + N    FSKEPNN+ NLNS++++GL  +K V +   P  K  +VV    K K  NKPA    K+ +R++F   A+  + +V      N+YR DL KA L R SA+ RS +  K
Sbjct:    1 MSSHLNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIK 127          
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 48/142 (33.80%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  273 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 698
            +S  L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++       VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    1 MSAHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135          
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 54/151 (35.76%), Postives = 79/151 (52.32%), Query Frame = -3
Query:  267 MATVSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFP----RMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATKVP 707
            MAT S  L W I++ NN FL+K   + +    FS EPNNL +++S+++SG+ ++KT+ + P            K K   +PA    K+T+R +F     R  K + N +  + YR DL +AAL R SAV RS K +    KK      K P
Sbjct:    1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKP 143          
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = -3
Query:  309 TVSGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMA-KAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSK 701
            +VS  LIW++++ NN FLVK  +FG     ++F++EP N+   N+ + SGL N K V +Q       V++     K   KPA L  K  +     R   K++  ++    YR DL K ++AR SA+  S +  K
Sbjct:    2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKK 131          
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_DICDI (60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = -3
Query:  282 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP-GGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQ 698
            +S  L+W I+KKNN FL    G     +  S EP NL N NS K+SGLA R T+ +    GK   VV+++   KK   PA     +T      R     V  +A   Y P+L+ AAL RL  V  +L+ +K    ++ ++
Sbjct:    1 MSQDLVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLA-TQYAPELRAAALGRLHRVQSALRSAKKAAARKAKK 131          
The following BLAST results are available for this feature:
BLAST of CF832362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RL281_ARATH6.901e-5674.1360S ribosomal protein L28-1 OS=Arabidopsis thalian... [more]
RL282_ARATH1.177e-5573.4360S ribosomal protein L28-2 OS=Arabidopsis thalian... [more]
RL28_MOUSE9.118e-1634.5160S ribosomal protein L28 OS=Mus musculus GN=Rpl28... [more]
RL28_HUMAN9.118e-1634.5160S ribosomal protein L28 OS=Homo sapiens GN=RPL28... [more]
RL28_BOVIN1.555e-1534.5160S ribosomal protein L28 OS=Bos taurus GN=RPL28 P... [more]
RL28_SPOFR2.031e-1540.4460S ribosomal protein L28 OS=Spodoptera frugiperda... [more]
RL28_RAT2.246e-1433.8060S ribosomal protein L28 OS=Rattus norvegicus GN=... [more]
RL28_DROME1.115e-1335.7660S ribosomal protein L28 OS=Drosophila melanogast... [more]
RL28E_SCHPO4.236e-1333.58Probable 60S ribosomal protein L28e OS=Schizosacch... [more]
RL28_DICDI1.363e-1135.0060S ribosomal protein L28 OS=Dictyostelium discoid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01L24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832362 ID=CF832362; Name=CF832362; organism=Citrus sinensis; type=EST; length=724bp
TTTTTTTTTTTTTTTTTATTGCGCTTAAAAGTACCACTCCCCTTATGATA
CAAAATAACACGCCAATTCAACATAAAAACCAAATCAAGTTAAAATCTAA
ATTTTGACCCTTTTCCCAGGGGGGTGGAACGGGCTAATATCTCCAGTACA
TCAAAAATTAAACATAAATGAAAACTGTCTTCTTGATACTTATAAGAACT
AAAATAAAACCATTCCAAGAACAAAGCATAACATCACTCCATTCCTCCTA
AAGTTCACTTCCTAACGGGAACCTTCGTAGCCTGCCTGTTTCTCTTTTTG
ACACCAAATTTTGAGACCTTTAGGCTCCTGTTAACAGCACTAAGCCTTGC
AAGGGCTGCCTTCTTCAAGTCTGGCCTGTAATAGTTATCAGCAACCTGAT
TGACAACAGCCTTAGCCATTCTTGGGAACTCCTTCCTCATGGTGGATTTG
TGAAGCAAGCTGGCAGGCTTGTTCTGCTTCTTGGTCTTTGCAGTGGCCAA
CACCACAGACAGGTCCTTGCCTCCAGGCTGAATGGTCACAGTCTTCCGAT
TCGCCAAACCGGAGTGTTTGAAGGAGTTAAGGTTGTAAAGGTTGTTGGGT
TCCTTGCTGAACTCGACGCTGGCGTTGCCTCTGCCGAATTGTTTAACCAA
GAAGCAGTTGTTCTTCTTCACGATCTCCCAAATCAACTGTCCTGAAACCG
TCGCCATTTCTTTCTGCCTTTTTT
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