CF832362
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 6.901e-56 Identity = 106/143 (74.13%), Postives = 124/143 (86.71%), Query Frame = -3 Query: 279 MATVSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQA 707 MATV GQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGLAN+KTVTIQ KD +VVLAT KTKKQNKP ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALARLSA+++ L+V+K G K+RNRQA Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 1.177e-55 Identity = 105/143 (73.43%), Postives = 122/143 (85.31%), Query Frame = -3 Query: 279 MATVSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQA 707 MATV GQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGLAN+KTVTIQ GKD VVL T KTK+QNKP ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+K G K+RNRQA Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16 Identity = 49/142 (34.51%), Postives = 79/142 (55.63%), Query Frame = -3 Query: 273 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 698 +S L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 1 MSAHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3) HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16 Identity = 49/142 (34.51%), Postives = 79/142 (55.63%), Query Frame = -3 Query: 273 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 698 +S L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 1 MSAHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVMVKRKRTRPTK 135
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3) HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15 Identity = 49/142 (34.51%), Postives = 79/142 (55.63%), Query Frame = -3 Query: 273 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 698 +S L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++P VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 1 MSAHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVMVKRKPSRPTK 135
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15 Identity = 55/136 (40.44%), Postives = 77/136 (56.62%), Query Frame = -3 Query: 309 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTI--QPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQV----ADNYYRPDLKKAALARLSAVNRSLKVSK 698 +S L W I++ NN FLVK + N FSKEPNN+ NLNS++++GL +K V + P K +VV K K NKPA K+ +R++F A+ + +V N+YR DL KA L R SA+ RS + K Sbjct: 1 MSSHLNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIK 127
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4) HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14 Identity = 48/142 (33.80%), Postives = 78/142 (54.93%), Query Frame = -3 Query: 273 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 698 +S L W +V+ + FL+K+ + +S EPNNL NSF+++GL +RKTV ++ VV+ + Q KPA+ ++T+ K ++ + + N YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 1 MSAHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13 Identity = 54/151 (35.76%), Postives = 79/151 (52.32%), Query Frame = -3 Query: 267 MATVSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFP----RMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATKVP 707 MAT S L W I++ NN FL+K + + FS EPNNL +++S+++SG+ ++KT+ + P K K +PA K+T+R +F R K + N + + YR DL +AAL R SAV RS K + KK K P Sbjct: 1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKP 143
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13 Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = -3 Query: 309 TVSGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMA-KAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSK 701 +VS LIW++++ NN FLVK +FG ++F++EP N+ N+ + SGL N K V +Q V++ K KPA L K + R K++ ++ YR DL K ++AR SA+ S + K Sbjct: 2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKK 131
BLAST of CF832362 vs. ExPASy Swiss-Prot
Match: RL28_DICDI (60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11 Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = -3 Query: 282 VSGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP-GGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQ 698 +S L+W I+KKNN FL G + S EP NL N NS K+SGLA R T+ + GK VV+++ KK PA +T R V +A Y P+L+ AAL RL V +L+ +K ++ ++ Sbjct: 1 MSQDLVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLA-TQYAPELRAAALGRLHRVQSALRSAKKAAARKAKK 131 The following BLAST results are available for this feature:
BLAST of CF832362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832362 ID=CF832362; Name=CF832362; organism=Citrus sinensis; type=EST; length=724bpback to top |