CF832363

Overview
NameCF832363
Unique NameCF832363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832363_ssr28 microsatellite CF832363_ssr28:28..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig646 contig Csv1_Contig646:49..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 7.024e-54
Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = 2
Query:  158 MATGPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVK 568
            MAT PGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGLAN+KTVTIQ   KD +VVLAT KTKKQNKP   ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K
Sbjct:    1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAK 137          
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.565e-53
Identity = 101/137 (73.72%), Postives = 117/137 (85.40%), Query Frame = 2
Query:  158 MATGPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKSGVK 568
            MAT PGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGLAN+KTVTIQ  GKD  VVL T KTK+QNKP   ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARLSA+++ L+V+KSG K
Sbjct:    1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPK 137          
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.768e-15
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 2
Query:  179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTI--QPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQV----ADNYYRPDLKKAALARLSAVNRSLKVSKS 559
            L W I++ NN FLVK   + N    FSKEPNN+ NLNS++++GL  +K V +   P  K  +VV    K K  NKPA    K+ +R++F   A+  + +V      N+YR DL KA L R SA+ RS +  K+
Sbjct:    5 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIKA 128          
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 547
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122          
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 547
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122          
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 547
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122          
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 547
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL +RKTV ++       VV+   +   Q KPA+   ++T+ K       ++ + +  N YRPDL+ AA+ R SA+ RS K
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122          
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  158 MATGPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFP----RMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLK 547
            MAT    L W I++ NN FL+K   + +    FS EPNNL +++S+++SG+ ++KT+ + P            K K   +PA    K+T+R +F     R  K + N +  + YR DL +AAL R SAV RS K
Sbjct:    1 MATS-SHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQK 126          
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 2
Query:  179 LIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMA-KAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSKS 559
            LIW++++ NN FLVK  +FG     ++F++EP N+   N+ + SGL N K V +Q       V++     K   KPA L  K  +     R   K++  ++    YR DL K ++AR SA+  S +  K+
Sbjct:    7 LIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKT 132          
BLAST of CF832363 vs. ExPASy Swiss-Prot
Match: RL28_DICDI (60S ribosomal protein L28 OS=Dictyostelium discoideum GN=rpl28 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 48/127 (37.80%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  179 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLANRKTVTIQP-GGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLSAVNRSLKVSK 556
            L+W I+KKNN FL    G     +  S EP NL N NS K+SGLA R T+ +    GK   VV+++   KK   PA     +T      R     V  +A   Y P+L+ AAL RL  V  +L+ +K
Sbjct:    5 LVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLA-TQYAPELRAAALGRLHRVQSALRSAK 122          
The following BLAST results are available for this feature:
BLAST of CF832363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RL281_ARATH7.024e-5474.4560S ribosomal protein L28-1 OS=Arabidopsis thalian... [more]
RL282_ARATH1.565e-5373.7260S ribosomal protein L28-2 OS=Arabidopsis thalian... [more]
RL28_SPOFR3.768e-1540.6060S ribosomal protein L28 OS=Spodoptera frugiperda... [more]
RL28_MOUSE6.427e-1535.7760S ribosomal protein L28 OS=Mus musculus GN=Rpl28... [more]
RL28_HUMAN6.427e-1535.7760S ribosomal protein L28 OS=Homo sapiens GN=RPL28... [more]
RL28_BOVIN6.427e-1535.7760S ribosomal protein L28 OS=Bos taurus GN=RPL28 P... [more]
RL28_RAT1.583e-1334.9660S ribosomal protein L28 OS=Rattus norvegicus GN=... [more]
RL28_DROME6.016e-1336.5760S ribosomal protein L28 OS=Drosophila melanogast... [more]
RL28E_SCHPO2.286e-1233.08Probable 60S ribosomal protein L28e OS=Schizosacch... [more]
RL28_DICDI2.527e-1137.8060S ribosomal protein L28 OS=Dictyostelium discoid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01L24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832363 ID=CF832363; Name=CF832363; organism=Citrus sinensis; type=EST; length=568bp
GTTGCTCTTCGCATTCTAAGGTCCTGATCTCTCTCTCTTCACTCCCCCCC
ACTGCTGTAAGGTTTGATTTCATACATCATCAATTTTCTATATAGCAGCA
CTGATTTGTTTAGGCTGTGTTTGGCAGTGAGTCGGAGTGAAAAAAAGGCA
GAAAGAAATGGCGACGGGTCCAGGACAGTTGATTTGGGAGATCGTGAAGA
AGAACAACTGCTTCTTGGTTAAACAATTCGGCAGAGGCAACGCCAGCGTC
GAGTTCAGCAAGGAACCCAACAACCTCTACAACCTTAACTCCTTCAAACA
CTCCGGTTTGGCGAATCGGAAGACTGTGACCATTCAGCCTGGAGGCAAGG
ACCTGTCTGTGGTGTTGGCCACTGCAAAGACCAAGAAGCAGAACAAGCCT
GCCAGCTTGCTTCACAAATCCACCATGAGGAAGGAGTTCCCAAGAATGGC
TAAGGCTGTTGTCAATCAGGTTGCTGATAACTACTACAGGCCAGACTTGA
AGAAGGCAGCCCTTGCAAGGCTTAGTGCTGTTAACAGGAGCCTAAAGGTC
TCAAAATCTGGTGTCAAA
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