CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB_ARATH (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.544e-95
Identity = 167/202 (82.67%), Postives = 192/202 (95.05%), Query Frame = 2
Query:  242 VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA 847
            +RGL+NKLVSRSL+++G+WQ QQLRRLNIHEYQGAELM KYG+NVPKG+A +S++EVKKA QDVFP+  ELVVKSQILAGGRGLGTFKSGLKGGVHIVK++E E++AGKMLGQ+LVTKQTGPQGK+VSKVYLCEKLSLVNEMYF+I+LDRK+AGP+II C KGGTSIEDLAEK+P+MI+KVPIDVF GITDEDAAKVVDGLA
Sbjct:    1 MRGLVNKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKAIQDVFPNESELVVKSQILAGGRGLGTFKSGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQTGPQGKVVSKVYLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIKVPIDVFAGITDEDAAKVVDGLA 202          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB_ORYSJ (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0621700 PE=1 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 3.504e-92
Identity = 169/203 (83.25%), Postives = 182/203 (89.66%), Query Frame = 2
Query:  239 MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA 847
            MVRG L KL SR+L+VAG+WQ QQLRRLNIHEYQGAELM KYGINVP+G A  SV+EVK   ++VFP  KE+VVKSQILAGGRGLGTFKSGL+GGVHIVK EE E LA KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI LDR TAGP+II CSKGGTSIEDLAEKYP+MI+KVPIDVF GITD+DAAKVVDGLA
Sbjct:    1 MVRGSLGKLASRALSVAGKWQHQQLRRLNIHEYQGAELMGKYGINVPRGAAAGSVEEVKNTLKNVFPSEKEIVVKSQILAGGRGLGTFKSGLQGGVHIVKAEEAESLAAKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMIIKVPIDVFKGITDDDAAKVVDGLA 203          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB1_MOUSE (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Sucla2 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.545e-39
Identity = 85/178 (47.75%), Postives = 120/178 (67.42%), Query Frame = 2
Query:  293 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            Q QQQQ R L++HEY   EL+ + G++VPKG    S DE     + +    K++V+K+Q+LAGGRG GTF SGLKGGV IV   EE + ++ +M+GQ L+TKQTG +G+I ++V +CE+     E YFAI ++R   GP++IG ++GG +IED+A + P  IVK PID+  GI  E A
Sbjct:   44 QVQQQQQRTLSLHEYLSMELLQEAGVSVPKGFVAKSSDEAYAIAKKL--GSKDVVIKAQVLAGGRGKGTFTSGLKGGVKIVFSPEEAKAVSSQMIGQKLITKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGPVLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQA 219          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB1_PIG (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.018e-39
Identity = 84/181 (46.41%), Postives = 122/181 (67.40%), Query Frame = 2
Query:  293 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            Q QQQQ R L++HEY   EL+ + G+++PKG    S DE     + +    K++V+K+Q+LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+     E YFAI ++R   GP++IG S+GG +IED+A + P  IVK PID+  GI  E A ++
Sbjct:    6 QIQQQQQRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKL--GSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRL 184          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB1_HUMAN (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2 PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 5.871e-39
Identity = 84/181 (46.41%), Postives = 121/181 (66.85%), Query Frame = 2
Query:  293 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            Q QQQQ R L++HEY   EL+ + G++VPKG    S DE     + +    K++V+K+Q+LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+     E YFAI ++R   GP++IG S GG +IED+A + P  I+K PID+  GI  E A ++
Sbjct:   44 QVQQQQQRNLSLHEYMSMELLQEAGVSVPKGYVAKSPDEAYAIAKKL--GSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGPVLIGSSHGGVNIEDVAAESPEAIIKEPIDIEEGIKKEQALQL 222          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB1_DICDI (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsC PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.667e-39
Identity = 83/180 (46.11%), Postives = 116/180 (64.44%), Query Frame = 2
Query:  308 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            Q R LN+HEYQ  ++M  YGIN P G    + +E +K  + +  + ++LVVK+Q+LAGGRG G F SGLKGGV +    E+V+  A KMLG  LVTKQTG  GK+V +VY+ E+  L  EMYFAI++DRK  GP+++   +GG  IE +A   P+ I K PID+  G+  E   ++ + L
Sbjct:   31 QKRFLNVHEYQAQKMMKSYGINCPVGNVAETPEEAEKIAEVM--NTQDLVVKAQVLAGGRGKGIFTSGLKGGVQLCSSAEDVKKFASKMLGHTLVTKQTGEDGKVVHQVYVTERHFLRKEMYFAILMDRKAGGPVMVASPEGGVDIEGVARDNPSAIFKEPIDIMIGVQPEQTKRLAEKL 208          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB1_MACFA (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Macaca fascicularis GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.708e-38
Identity = 82/181 (45.30%), Postives = 121/181 (66.85%), Query Frame = 2
Query:  293 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            Q QQQQ R L++HEY   EL+ + G+++PKG    S DE     + +    K++V+K+Q+LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+     E YFAI ++R   GP++IG S+GG +IED+A + P  I+  PID+  GI  E A ++
Sbjct:   44 QVQQQQQRNLSLHEYMSMELLQEAGVSIPKGCVAKSPDEAYAVAKKL--GSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIITEPIDIEEGIKKEQALQL 222          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB1_BOVIN (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.231e-38
Identity = 83/181 (45.86%), Postives = 120/181 (66.30%), Query Frame = 2
Query:  293 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            Q Q QQ R L++HEY   EL+ + G+++PKG    S DE     + +    K++V+K+Q+LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+     E YFAI ++R   GP++IG S GG +IED+A + P  IVK PID+  GI  E A ++
Sbjct:   44 QIQHQQQRNLSLHEYLSMELLQEAGVSIPKGHVAKSPDEAYAIAKKL--GSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSHGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRL 222          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_AKKM8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=sucC PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.221e-37
Identity = 80/176 (45.45%), Postives = 115/176 (65.34%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ  +L  ++G+  PKG+A ++  E  +  +++     + VVK+Q+ AGGRG GTFK+G KGGVH+VK  EEVE++AGKML Q+LVTKQTG  GK+VSK+ + E + L  E YFAI+ DR    P+I+  ++GG  IE++A   P  I++  I+   GI    A K+   L
Sbjct:    1 MNIHEYQAKQLFERFGVATPKGIAASTAQEAAQTARNM--GLSQYVVKAQVHAGGRGKGTFKNGFKGGVHVVKSVEEVEEVAGKMLNQVLVTKQTGEAGKLVSKIMVAEAVDLKKECYFAILQDRARECPVIVASTEGGMDIEEVAATRPEAIIREHINPALGILPFQALKIAVAL 174          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Neurospora crassa GN=B9J10.140 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.075e-36
Identity = 78/182 (42.86%), Postives = 116/182 (63.74%), Query Frame = 2
Query:  302 QQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            QQQ R L+IHEY  A+L+ +YGI VPKG    +  E +   + +    +++V+K+Q+LAGGRG GTF +GLKGGV ++    E +  A +M+G  L+TKQTG QG++ S VY+CE+     E Y A+++DR + GP+I+  S+GG  IE +A++ P  I    ID+  G+TDE A  +   L
Sbjct:   31 QQQRRALSIHEYLSADLLRQYGIGVPKGDVARTGAEAEAIAKQI--GGEDMVIKAQVLAGGRGKGTFDNGLKGGVRVIYSPTEAKMFAEQMIGHKLITKQTGAQGRLCSAVYICERKFARREFYLAVLMDRASQGPVIVSSSQGGMDIEGVAKENPEAIHTTYIDINVGVTDEMARDIATKL 210          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCB_ARATH7.544e-9582.67Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB_ORYSJ3.504e-9283.25Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB1_MOUSE1.545e-3947.75Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_PIG2.018e-3946.41Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_HUMAN5.871e-3946.41Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_DICDI7.667e-3946.11Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_MACFA1.708e-3845.30Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_BOVIN2.231e-3845.86Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCC_AKKM83.221e-3745.45Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB_NEUCR6.075e-3642.86Probable succinyl-CoA ligase [GDP-forming] subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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