CF832372

Overview
NameCF832372
Unique NameCF832372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: TYDC5_PAPSO (Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferum GN=TYDC5 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.239e-41
Identity = 88/156 (56.41%), Postives = 109/156 (69.87%), Query Frame = -3
Query:  245 QVVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYV--NCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEA 706
            QV+DYKDWQI LS RFRS+KLW V+R+YG ANLR FL SHV MAK F+ L++ DKRFEIV P  FA VCFR+ P+ +   KL    V  NC+     + NE N +LL  +NA G  YMTHAV+GG+Y IRFA G TLTE+RHV + W  +Q+  +A
Sbjct:  360 QVIDYKDWQIALSRRFRSMKLWLVLRSYGVANLRSFLRSHVKMAKHFDGLIAMDKRFEIVVPNTFAMVCFRLKPAAIFNGKLGENGVDYNCIEE---KTNEINSKLLESVNASGSIYMTHAVVGGVYMIRFAVGATLTEERHVSMAWKVIQEHTDA 512          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: TYDC1_PAPSO (Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum GN=TYDC1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.051e-40
Identity = 86/155 (55.48%), Postives = 106/155 (68.39%), Query Frame = -3
Query:  245 QVVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKL-KTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEA 706
            QV+DYKDWQI LS RFRS+KLW V+R+YG ANLR FL SHV MAK F+ L+  D RFEIV P  FA VCFR+ P+ +   K+ +  ++        Q NE N +LL  +NA GK YMTHAV+GG+Y IRFA G TLTE+RHV   W  VQ+  +A
Sbjct:  360 QVIDYKDWQIALSRRFRSMKLWLVLRSYGIANLRTFLRSHVKMAKHFQGLIGMDNRFEIVVPRTFAMVCFRLKPAAIFRKKIVEDDHIE------AQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFAVGATLTEERHVTGAWKVVQEHTDA 508          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: TYDC2_PAPSO (Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum GN=TYDC2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.954e-36
Identity = 84/163 (51.53%), Postives = 99/163 (60.74%), Query Frame = -3
Query:  257 QVVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQI-------------NEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQ 706
            QVVDYKDWQI LS RFRSLKLW V+R+YG  NLR+FL SHV MAK FE L+  D RFEI  P  FA VCFR+ P      K    Y N +   G  +             N+ N   L  +NA G  YMTHAV+GG+Y IRFA G TLTE+RHV+  W  +Q+
Sbjct:  358 QVVDYKDWQIALSRRFRSLKLWMVLRSYGVTNLRNFLRSHVKMAKTFEGLICMDGRFEITVPRTFAMVCFRLLP-----PKTIKVYDNGVHQNGNGVVPLRDENENLVLANKLNQVYLETVNATGSVYMTHAVVGGVYMIRFAVGSTLTEERHVIYAWKILQE 515          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: TYDC3_PETCR (Tyrosine decarboxylase 3 OS=Petroselinum crispum GN=TYRDC-3 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.583e-35
Identity = 80/162 (49.38%), Postives = 101/162 (62.35%), Query Frame = -3
Query:  224 QVVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEA-FQRAFKP 706
            +VVDYKDWQI LS RFR+LKLWFV+R+YG   LR F+  HV MAK FE LV  DKRFE+V P  F+ VCFR+ PS ++             +   ++NE N +LL  +N  G+ Y++H VLGGIY IRFA G TLT+  HV   W  +Q   +A    AF P
Sbjct:  358 KVVDYKDWQIMLSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVGLDKRFEVVAPRLFSMVCFRIKPSAMIGK-----------NDENEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHADALLDDAFLP 508          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: TYDC4_PETCR (Tyrosine decarboxylase 4 OS=Petroselinum crispum GN=TYRDC-4 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.123e-34
Identity = 77/154 (50.00%), Postives = 98/154 (63.64%), Query Frame = -3
Query:  245 QVVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEA 706
            +VVDYKDWQI LS RFR+LKLWFV+R+YG   LR F+  HV MAK FE LV  DKRFE+V P  F+ VCFR+ PS ++             +   ++NE N +LL  +N  G+ Y++H VLGGIY IRFA G TLT+  HV   W  +Q   +A
Sbjct:  357 KVVDYKDWQIMLSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVGLDKRFEVVAPRLFSMVCFRIKPSAMIGK-----------NDEDEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHADA 499          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: TYDC3_PAPSO (Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferum GN=TYDC3 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.123e-34
Identity = 81/164 (49.39%), Postives = 98/164 (59.76%), Query Frame = -3
Query:  257 QVVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQI--------------NEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQ 706
            QVVDYKDWQI L  RFRS+KLW V+R+YG  NLR+FL SHV MAK FE LV  D+RFEI  P  FA VCFR+ P       +K    N +   G  +              N+ N   L  + A G  YMTHAV+GG+Y IRFA G TLTE+RHV+  W  +Q+
Sbjct:  358 QVVDYKDWQIALIRRFRSMKLWMVLRSYGVTNLRNFLRSHVRMAKTFEGLVGADRRFEITVPRTFAMVCFRLLPPTT----VKVCGENGVHQNGNGVIAVLRNENEELVLANKLNQVYLRQVKATGSVYMTHAVVGGVYMIRFAVGSTLTEERHVIHAWEVLQE 517          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: TYDC2_PETCR (Tyrosine decarboxylase 2 OS=Petroselinum crispum GN=TYRDC-2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.467e-34
Identity = 76/149 (51.01%), Postives = 97/149 (65.10%), Query Frame = -3
Query:  260 QVVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQ 706
            +VVDYKDWQI LS RFR+LKLWFV+R+YG   LR F+  HV MAK FE LV+ DKRFE+V P  F+ VCFR+ PS ++             +   ++NE N +LL  +N  G+ Y++H VLGGIY IRFA G TLT+  HV   W  +Q
Sbjct:  356 KVVDYKDWQIMLSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVNMDKRFEVVAPRLFSMVCFRIKPSAMIGK-----------NDEDEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQ 493          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: TYDC2_ARATH (Probable tyrosine decarboxylase 2 OS=Arabidopsis thaliana GN=At4g28680 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30
Identity = 70/156 (44.87%), Postives = 94/156 (60.26%), Query Frame = -3
Query:  236 VVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEAFQR 703
            VV+YKDWQI+LS RFRSLKLW V+R YG  NLR+F+  HVN+AK FE  V+ D  FE+V   +F+ VCFR++P               +     Q NE N ELL  +N+ GK +++H  L G + +RFA G  LTE++HV   W  +Q+    F R
Sbjct:  401 VVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAP---------------VDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTR 541          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DDC_CATRO (Aromatic-L-amino-acid decarboxylase OS=Catharanthus roseus GN=TDC PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 65/150 (43.33%), Postives = 91/150 (60.67%), Query Frame = -3
Query:  257 QVVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQ 706
            +VVD+K+WQI    +FRSLKLW ++R+YG  NL+  + S V M K+FE  V  D RFEIV P +F+ VCFR+ P            V+ L      + E N +LL  +N+ G+ YMTH ++GGIY +R A G +LTE+ HV   W  +Q+
Sbjct:  358 KVVDFKNWQIATGRKFRSLKLWLILRSYGVVNLQSHIRSDVAMGKMFEEWVRSDSRFEIVVPRNFSLVCFRLKPD-----------VSSL-----HVEEVNKKLLDMLNSTGRVYMTHTIVGGIYMLRLAVGSSLTEEHHVRRVWDLIQK 491          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: TYDC1_ARATH (Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 68/149 (45.64%), Postives = 88/149 (59.06%), Query Frame = -3
Query:  257 VVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQ 703
            VVDYKDWQI L  RFRSLKLW V+R YG   L+ ++ +H+ +AK FE+LVS D  FEIV P  FA VCFR+ P       +K +   C        N  N ELL  +N+ GK +M+H  L G   +R A G  LTE++HV   W  +Q+
Sbjct:  349 VVDYKDWQIPLGRRFRSLKLWMVLRLYGSETLKSYIRNHIKLAKEFEQLVSQDPNFEIVTPRIFALVCFRLVP-------VKDEEKKC--------NNRNRELLDAVNSSGKLFMSHTALSGKIVLRCAIGAPLTEEKHVKEAWKIIQE 482          
The following BLAST results are available for this feature:
BLAST of CF832372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TYDC5_PAPSO1.239e-4156.41Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferu... [more]
TYDC1_PAPSO3.051e-4055.48Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferu... [more]
TYDC2_PAPSO5.954e-3651.53Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferu... [more]
TYDC3_PETCR6.583e-3549.38Tyrosine decarboxylase 3 OS=Petroselinum crispum G... [more]
TYDC4_PETCR1.123e-3450.00Tyrosine decarboxylase 4 OS=Petroselinum crispum G... [more]
TYDC3_PAPSO1.123e-3449.39Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferu... [more]
TYDC2_PETCR1.467e-3451.01Tyrosine decarboxylase 2 OS=Petroselinum crispum G... [more]
TYDC2_ARATH1.678e-3044.87Probable tyrosine decarboxylase 2 OS=Arabidopsis t... [more]
DDC_CATRO7.794e-2843.33Aromatic-L-amino-acid decarboxylase OS=Catharanthu... [more]
TYDC1_ARATH1.329e-2745.64Tyrosine decarboxylase 1 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832372 ID=CF832372; Name=CF832372; organism=Citrus sinensis; type=EST; length=711bp
TTTTTTTTTTTTTTTTTAACCAAAGCACGGGAATTTGGGCCCACAAGTTC
GGCCTTTTTTGTTTTTTTTCCTTGGACAAGGGTTTTAACTTTTAACGGGA
GGATCTAAAGGGACAGGCCGAACTCTATCTGCATCTGGCGGACTTTTTAG
CTGCATTTCCAGCCAATGCATTTCCTTCTGTCTTCCCCCAGTTCAAATAG
CTGCATTTCCACCCCATAACTTAGGGTTTAAATGCCCTTTGAAAAGCTTC
CAAGGGCTGTTGCACCCCCGTCCACCCCACCACTACGTGTCGTTTCTCTG
TCAACGTAACACCAGGGGCAAATCGTATGGCGTAAATTCCCCCCAAAACG
GCATGGGTCATGTATGCTTTTCCAAATGCATTAATCCACCCCAGTAATTC
CCCATTGAATTCGTTTATTTGTCCCCCCCCCGAAAACAAACAATTTACGT
ATTTGGTTTTAAGTTTATCCATGAGTACTGGGGATGGCGAAACCCTAAAG
CAAACCCCGGCAAAATGACAGGGAAACACAATTTCAAACCTCTTATCACC
GCTTACAAGCCTTTCAAAAAGCTTGGCCATGTTTACATGGCTGCAAAGGA
AGTGCCTTAAATTTGCCCCGCCATAGTTTCTTATCACAAACCATAGTTTC
AGCGAACGAAATCTTCCACTCAAAGTTATTTGCCAATCTTTGTAATCCAC
CACTTGCATCC
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