CF832378

Overview
NameCF832378
Unique NameCF832378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832378_ssr210 microsatellite CF832378_ssr210:210..221. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832378_ssr235 microsatellite CF832378_ssr235:235..246. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: U727_ORYSJ (UPF0727 protein OS=Oryza sativa subsp. japonica GN=Os03g0690000 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.968e-26
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            IQRLG+ QPDGSYKVTFGV+F+DDRCANIFEALVGTLRAAKKRK + YDGELLLQG HDNVEITL
Sbjct:   14 IQRLGQKQPDGSYKVTFGVIFNDDRCANIFEALVGTLRAAKKRKIVKYDGELLLQGAHDNVEITL 78          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: U727_ORYSI (UPF0727 protein OS=Oryza sativa subsp. indica GN=OsI_012692 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.968e-26
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            IQRLG+ QPDGSYKVTFGV+F+DDRCANIFEALVGTLRAAKKRK + YDGELLLQG HDNVEITL
Sbjct:   14 IQRLGQKQPDGSYKVTFGVIFNDDRCANIFEALVGTLRAAKKRKIVKYDGELLLQGAHDNVEITL 78          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: U727_THEHA (UPF0727 protein ST45-2 OS=Thellungiella halophila PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.842e-24
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = -2
Query:  248 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITLK 445
            I RLG +Q DGSYKVTFGVLF+DDRCANIFEALVGTLRAAKKRK + + GELLLQGVHD VEITL+
Sbjct:   14 IHRLGSLQSDGSYKVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVAFPGELLLQGVHDKVEITLR 79          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: U727_ARATH (UPF0727 protein At4g33640 OS=Arabidopsis thaliana GN=At4g33640 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.142e-24
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = -2
Query:  248 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITLK 445
            I RLG  Q DGSYKVTFGVLF+DDRCANIFEALVGTLRAAKKRK + ++GELLLQGVHD VEITL+
Sbjct:   14 IHRLGSRQTDGSYKVTFGVLFNDDRCANIFEALVGTLRAAKKRKIVAFEGELLLQGVHDKVEITLR 79          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: U727_PICSI (UPF0727 protein WS02710_H03 OS=Picea sitchensis PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            I+RL + +PDGSY V FGVLF DDRCANIFEALVGTLRAAKKRK +TYDGELLLQGVHDNVEI L
Sbjct:   16 IKRLAQPRPDGSYVVKFGVLFSDDRCANIFEALVGTLRAAKKRKVVTYDGELLLQGVHDNVEIVL 80          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: CF115_SALSA (UPF0727 protein C6orf115 homolog OS=Salmo salar PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.235e-20
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            IQRLG    DG   V FGVLF+DDRCANIFEALVGTLRAAK++K + ++GELLLQGVHDNV+ITL
Sbjct:   14 IQRLGSKNADGQTCVKFGVLFNDDRCANIFEALVGTLRAAKRKKIIAFEGELLLQGVHDNVDITL 78          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: CF115_XENLA (UPF0727 protein C6orf115 homolog OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.614e-20
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            I+RLG    DG + V FGVLF DD+CAN+FEALVGTL+AAKKRK +TY GELLLQGVHDNV+I L
Sbjct:   14 IRRLGSKGNDGKFSVKFGVLFSDDKCANLFEALVGTLKAAKKRKIITYQGELLLQGVHDNVDIVL 78          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: CF115_XENTR (UPF0727 protein C6orf115 homolog OS=Xenopus tropicalis PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.132e-20
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            I+RLG    DG   V FGVLF DD+CAN+FEALVGTL+AAKKRK +TY GELLLQGVHDNV+I L
Sbjct:   14 IRRLGSKGNDGKLSVKFGVLFSDDKCANLFEALVGTLKAAKKRKIVTYQGELLLQGVHDNVDIVL 78          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: CF115_DANRE (UPF0727 protein C6orf115 homolog OS=Danio rerio GN=si:dkey-34f16.3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.046e-19
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            I+RLG    DG   V FGVLF+DD+CAN+FEALVGTL+AAK++K +T+DGELLLQGVHDNV++ L
Sbjct:   14 IRRLGSKNADGKTSVKFGVLFNDDQCANLFEALVGTLKAAKRKKVITFDGELLLQGVHDNVDVVL 78          
BLAST of CF832378 vs. ExPASy Swiss-Prot
Match: CF115_MOUSE (UPF0727 protein C6orf115 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.784e-19
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = -2
Query:  251 IQRLGKIQPDGSYKVTFGVLFHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 445
            I RLG    DG   V FGVLF DDRCAN+FEALVGTL+AAK+RK +TY GELLLQGVHD+V+I L
Sbjct:   14 IHRLGSKNADGKLSVKFGVLFQDDRCANLFEALVGTLKAAKRRKIVTYAGELLLQGVHDDVDIVL 78          
The following BLAST results are available for this feature:
BLAST of CF832378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
U727_ORYSJ1.968e-2687.69UPF0727 protein OS=Oryza sativa subsp. japonica GN... [more]
U727_ORYSI1.968e-2687.69UPF0727 protein OS=Oryza sativa subsp. indica GN=O... [more]
U727_THEHA1.842e-2481.82UPF0727 protein ST45-2 OS=Thellungiella halophila ... [more]
U727_ARATH3.142e-2481.82UPF0727 protein At4g33640 OS=Arabidopsis thaliana ... [more]
U727_PICSI9.141e-2483.08UPF0727 protein WS02710_H03 OS=Picea sitchensis PE... [more]
CF115_SALSA1.235e-2073.85UPF0727 protein C6orf115 homolog OS=Salmo salar PE... [more]
CF115_XENLA1.614e-2072.31UPF0727 protein C6orf115 homolog OS=Xenopus laevis... [more]
CF115_XENTR6.132e-2072.31UPF0727 protein C6orf115 homolog OS=Xenopus tropic... [more]
CF115_DANRE1.046e-1967.69UPF0727 protein C6orf115 homolog OS=Danio rerio GN... [more]
CF115_MOUSE1.784e-1970.77UPF0727 protein C6orf115 homolog OS=Mus musculus P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832378 ID=CF832378; Name=CF832378; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTGCGTAGAGAATTGACCATATCCTCTTTTCCTCTC
TTTTGCATAAGCTCTTTTAGAGAAATGATTTAAAAGGCAAGCCAAGGTTC
AAATGTAAGACAATCACAGTAGACACACAACACAATTAATGAAGATAAAG
GGATTTATGGAAGATCTGGTAAAAGCAATACCAAATATTTGGCAGTTAAC
TAGGACTCAGCTGCTGCTGCTACCGCCAATGGTTGTGGTGGTGGTGGTTT
GAGGGTAATTTCAACATTATCGTGGACTCCTTGTAAGAGAAGCTCACCAT
CATATGTAAGAAATTTACGTTTCTTTGCAGCTCTCAGTGTCCCAACAAGT
GCCTCAAATATGTTCGCGCACCTATCATCATGAAATAGCACACCAAATGT
AACCTTGTAAGAGCCATCAGGTTGGATCTTGCCAAGTCGTTGGATTTCCT
CCTTGAGTCGCTCTACCTCTTCTTCCACATTCATGGCTTCTTCTTTTGTC
TTTTATCTTTTTTCAGTCTTTTATTTCCCCCTTTTTCTCCACTCACTTTC
T
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