CF832405

Overview
NameCF832405
Unique NameCF832405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832405_ssr211 microsatellite CF832405_ssr211:211..222. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1541 contig Csv1_Contig1541:37..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832405 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.344e-75
Identity = 136/161 (84.47%), Postives = 149/161 (92.55%), Query Frame = 3
Query:   69 ITVSKLRGKRYKLPPGPLPVPVFCNWLQVGDDLNHRNLSDLAKKYGDVLLLHMGQRNLDVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQEMVFTVYGEHWRNMRRIMSVPIFTNKVVQQHRFNWEDEAARVGEDVRKDPEAATNGIVWRRRLLLM 551
            I VSKLRGKR+KLPPGPLPVPVF NWLQVGDDLNHRNL+DLAKK+GD+ LL MGQRNL VVSSPD +KEVLHTQGVEFGSRTRNVVFDIFTGKGQ+MVFTVYGEHWR MRRIM+VP FTNKVVQQ+R+ WE+EAA+V EDV+K+PEAATNGIV RRRL LM
Sbjct:   21 ILVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDVKKNPEAATNGIVLRRRLQLM 181          
BLAST of CF832405 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 3.310e-74
Identity = 134/161 (83.23%), Postives = 149/161 (92.55%), Query Frame = 3
Query:   69 ITVSKLRGKRYKLPPGPLPVPVFCNWLQVGDDLNHRNLSDLAKKYGDVLLLHMGQRNLDVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQEMVFTVYGEHWRNMRRIMSVPIFTNKVVQQHRFNWEDEAARVGEDVRKDPEAATNGIVWRRRLLLM 551
            I VSKLRGKR+KLPPGPLPVPVF NWLQVGDDLNHRNL+DLAKK+GD+LLL MGQRNL VVSSP+ +KEVLHTQGVEFGSRTRNVVFDIFTGKGQ+MVFTVYGEHWR MRRIM+VP FTNKVVQQ+R+ WE+EAA+V EDV+K+P AAT+GIV RRRL LM
Sbjct:   21 ILVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDILLLRMGQRNLVVVSSPELSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDVKKNPGAATHGIVLRRRLQLM 181          
BLAST of CF832405 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 5.647e-74
Identity = 132/159 (83.02%), Postives = 147/159 (92.45%), Query Frame = 3
Query:   75 VSKLRGKRYKLPPGPLPVPVFCNWLQVGDDLNHRNLSDLAKKYGDVLLLHMGQRNLDVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQEMVFTVYGEHWRNMRRIMSVPIFTNKVVQQHRFNWEDEAARVGEDVRKDPEAATNGIVWRRRLLLM 551
            VSKLRGK++KLPPGP+PVPVF NWLQVGDDLNHRNLSD AKK+G++ LL MGQRNL VVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQ+MVFTVYGEHWR MRRIM+VP FTNKVVQQ+R+ WE+EAARV EDV+K+PE+ATNGIV RRRL LM
Sbjct:   23 VSKLRGKKFKLPPGPIPVPVFGNWLQVGDDLNHRNLSDYAKKFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAARVVEDVKKNPESATNGIVLRRRLQLM 181          
BLAST of CF832405 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.372e-72
Identity = 128/161 (79.50%), Postives = 145/161 (90.06%), Query Frame = 3
Query:   69 ITVSKLRGKRYKLPPGPLPVPVFCNWLQVGDDLNHRNLSDLAKKYGDVLLLHMGQRNLDVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQEMVFTVYGEHWRNMRRIMSVPIFTNKVVQQHRFNWEDEAARVGEDVRKDPEAATNGIVWRRRLLLM 551
            I +SKLRG+R+KLPPGP+PVP+F NWLQVGDDLNHRNL+DLAK++GD+ LL MGQRNL VVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQ+MVFTVYGEHWR MRRIM+VP FTNKVVQQ+RF WE EAA V +DVR++P+AA  GIV RRRL LM
Sbjct:   21 IAISKLRGRRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAASVVDDVRRNPDAAAGGIVLRRRLQLM 181          
BLAST of CF832405 vs. ExPASy Swiss-Prot
Match: TCMO_RUTGR (Trans-cinnamate 4-monooxygenase OS=Ruta graveolens GN=CYP73A2 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 9.015e-72
Identity = 132/161 (81.99%), Postives = 143/161 (88.82%), Query Frame = 3
Query:   69 ITVSKLRGKRYKLPPGPLPVPVFCNWLQVGDDLNHRNLSDLAKKYGDVLLLHMGQRNLDVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQEMVFTVYGEHWRNMRRIMSVPIFTNKVVQQHRFNWEDEAARVGEDVRKDPEAATNGIVWRRRLLLM 551
            I VSKLRGKR+KLPPGPL  PVF NWLQVGDDLN R L++L+KK+GDV LL MGQRNL VVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQ+MVFTVY EHWR MRRIM+VP FTNKVVQQ RFNWEDEAARV EDV+KDP+AAT GIV RRRL L+
Sbjct:   21 IAVSKLRGKRFKLPPGPLGFPVFGNWLQVGDDLNQRKLANLSKKFGDVYLLRMGQRNLVVVSSPEMAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYSEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPQAATTGIVLRRRLQLL 181          
BLAST of CF832405 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 9.015e-72
Identity = 128/161 (79.50%), Postives = 146/161 (90.68%), Query Frame = 3
Query:   69 ITVSKLRGKRYKLPPGPLPVPVFCNWLQVGDDLNHRNLSDLAKKYGDVLLLHMGQRNLDVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQEMVFTVYGEHWRNMRRIMSVPIFTNKVVQQHRFNWEDEAARVGEDVRKDPEAATNGIVWRRRLLLM 551
            I +SKLRGK++KLPPGP+PVP+F NWLQVGDDLNHRNL+DLAK++G++LLL MGQRNL VVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQ+MVFTVYGEHWR MRRIM+VP FTNKVVQQ+R+ WE EAA V +DV+K+P AAT GIV RRRL LM
Sbjct:   21 ILISKLRGKKFKLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEAEAAAVVDDVKKNPAAATEGIVIRRRLQLM 181          
BLAST of CF832405 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.008e-71
Identity = 129/161 (80.12%), Postives = 144/161 (89.44%), Query Frame = 3
Query:   69 ITVSKLRGKRYKLPPGPLPVPVFCNWLQVGDDLNHRNLSDLAKKYGDVLLLHMGQRNLDVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQEMVFTVYGEHWRNMRRIMSVPIFTNKVVQQHRFNWEDEAARVGEDVRKDPEAATNGIVWRRRLLLM 551
            I VSKLRGKR+KLPPGPLPVP+F NWLQVGDDLNHRNL+ LAK++GD+ LL MGQRNL VVSSPD AKEVLHTQGVEFGSRTRNVVFDIFTG+GQ+MVFTVYGEHWR MRRIM+VP FTNKVVQQ+R  WE EAA V +DVRK+P+AA +G+V RRRL LM
Sbjct:   21 IVVSKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTQLAKRFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGEGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWEAEAAAVVDDVRKNPDAAVSGLVIRRRLQLM 181          
BLAST of CF832405 vs. ExPASy Swiss-Prot
Match: TCMO_PETCR (Trans-cinnamate 4-monooxygenase OS=Petroselinum crispum GN=CYP73A10 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.623e-71
Identity = 129/161 (80.12%), Postives = 143/161 (88.82%), Query Frame = 3
Query:   69 ITVSKLRGKRYKLPPGPLPVPVFCNWLQVGDDLNHRNLSDLAKKYGDVLLLHMGQRNLDVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQEMVFTVYGEHWRNMRRIMSVPIFTNKVVQQHRFNWEDEAARVGEDVRKDPEAATNGIVWRRRLLLM 551
            IT+SKLRGK+ KLPPGP+PVPVF NWLQVGDDLN RNL D AKK+GD+ +L MGQRNL VVSSP+ AK+VLHTQGVEFGSRTRNVVFDIFTGKGQ+MVFTVY EHWR MRRIM+VP FTNKVVQQ+RF WEDEAARV EDV+ +PEAATNGIV R RL L+
Sbjct:   22 ITISKLRGKKLKLPPGPIPVPVFGNWLQVGDDLNQRNLVDYAKKFGDLFMLRMGQRNLVVVSSPELAKDVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYSEHWRKMRRIMTVPFFTNKVVQQYRFGWEDEAARVVEDVKANPEAATNGIVLRNRLQLL 182          
BLAST of CF832405 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 5.843e-71
Identity = 128/161 (79.50%), Postives = 143/161 (88.82%), Query Frame = 3
Query:   69 ITVSKLRGKRYKLPPGPLPVPVFCNWLQVGDDLNHRNLSDLAKKYGDVLLLHMGQRNLDVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQEMVFTVYGEHWRNMRRIMSVPIFTNKVVQQHRFNWEDEAARVGEDVRKDPEAATNGIVWRRRLLLM 551
            I VS LRG+++KLPPGPLPVP+F NWLQVGDDLNHRNL+DLAKK+GD+ LL MGQRNL VVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQ+MVFTVYGEHWR MRRIM+VP FTNKVVQQ+R  WE EAA V EDV+K+P+AA +G V RRRL LM
Sbjct:   21 IAVSTLRGRKFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWESEAAAVVEDVKKNPDAAVSGTVIRRRLQLM 181          
BLAST of CF832405 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 7.632e-71
Identity = 127/161 (78.88%), Postives = 145/161 (90.06%), Query Frame = 3
Query:   69 ITVSKLRGKRYKLPPGPLPVPVFCNWLQVGDDLNHRNLSDLAKKYGDVLLLHMGQRNLDVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQEMVFTVYGEHWRNMRRIMSVPIFTNKVVQQHRFNWEDEAARVGEDVRKDPEAATNGIVWRRRLLLM 551
            I +SKLRGKR+KLPPGP+PVP+F NWLQVGDDLNHRNL+DLAKK+G++ LL MGQRNL VVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQ+MVFTVYGEHWR MRRIM+VP FTNKVVQQ+R  WE EAA V +DV+K+P+AAT G+V R+RL LM
Sbjct:   21 IFISKLRGKRFKLPPGPVPVPIFGNWLQVGDDLNHRNLTDLAKKFGEIFLLRMGQRNLVVVSSPNLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRTGWEAEAAAVVDDVKKNPKAATEGVVIRKRLQLM 181          
The following BLAST results are available for this feature:
BLAST of CF832405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
TCMO_POPKI1.344e-7584.47Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
TCMO_POPTM3.310e-7483.23Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
TCMO_CATRO5.647e-7483.02Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
TCMO_GLYEC2.372e-7279.50Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
TCMO_RUTGR9.015e-7281.99Trans-cinnamate 4-monooxygenase OS=Ruta graveolens... [more]
TCMO_HELTU9.015e-7279.50Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]
TCMO_PHAAU2.008e-7180.12Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
TCMO_PETCR2.623e-7180.12Trans-cinnamate 4-monooxygenase OS=Petroselinum cr... [more]
TCMO_SOYBN5.843e-7179.50Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
TCMO_ZINEL7.632e-7178.88Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832405 ID=CF832405; Name=CF832405; organism=Citrus sinensis; type=EST; length=552bp
AGGTAAAGATGGATCTCCTCTTGCTGGAAAAGACGCTTTTAGCCCTCTTC
GCCGCAGTTGTTGTCGCCATTACCGTCTCTAAACTCCGCGGAAAGCGCTA
CAAGCTCCCCCCCGGACCCCTCCCCGTCCCCGTATTCTGTAACTGGCTCC
AGGTCGGCGATGACTTGAACCATCGGAACCTCTCCGACTTAGCCAAGAAA
TATGGAGATGTCCTCCTCCTCCACATGGGCCAGCGCAACCTCGACGTCGT
CTCGTCTCCGGATCACGCCAAGGAGGTTCTGCACACGCAGGGAGTGGAGT
TCGGATCACGAACGAGGAACGTCGTGTTCGATATCTTCACTGGGAAGGGC
CAGGAAATGGTGTTCACAGTGTACGGCGAGCACTGGCGGAATATGCGGAG
GATCATGAGCGTCCCTATCTTCACAAACAAAGTGGTTCAGCAGCATCGGT
TTAATTGGGAAGACGAGGCCGCTAGAGTCGGTGAGGATGTTAGGAAGGAC
CCCGAAGCGGCGACCAATGGGATCGTCTGGAGGAGGCGGCTGCTGCTTAT
GA
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