CF832435

Overview
NameCF832435
Unique NameCF832435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832435_ssr333 microsatellite CF832435_ssr333:333..344. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832435 vs. ExPASy Swiss-Prot
Match: TOP6B_ARATH (DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana GN=TOP6B PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.379e-19
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = -3 
Query:  116 KRRYEEEEEDVLRKVQSRSITKETL*EMLAQYVEKVDYEMALEYATQSGVIEEPWEAIYIQALE-DGYNFRDLHSSNFVFRFI 361
            ++RY EE+  +L KV  + ITKETL E LA++VE+VDYEMALEYATQSGV EEP E IY+Q L+ +  NF DLHS  FVFR +
Sbjct:  587 RKRYGEEDIVMLDKVSKQIITKETLKEKLAEHVEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPTFVFRLM 669
The following BLAST results are available for this feature:
BLAST of CF832435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TOP6B_ARATH4.379e-1961.45DNA topoisomerase 6 subunit B OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01N18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832435 ID=CF832435; Name=CF832435; organism=Citrus sinensis; type=EST; length=390bp
TTTAATACAAGGGAACCAAGTAATAACATGAACTATATAACAATTACTTG
ATCAAAAATATCGGGAATCTAATTGTTAAAAAAAATAAAAAGCAAAATTT
GACATGTTCCTTCTGGATGAATCTGAAGACAAAGTTGGAACTGTGCAAGT
CTCTGAAGTTATATCCATCTTCAAGTGCTTGAATGTATATAGCTTCCCAT
GGTTCCTCGATCACCCCGCTTTGTGTCGCATACTCCAATGCCATCTCGTA
GTCTACCTTTTCAACATATTGAGCAAGCATTTCTTACAGAGTCTCTTTTG
TGATTGACCGAGACTGGACTTTCCTAAGAACGTCTTCTTCTTCTTCCTCG
TATCTCCTCTTCTATTGAGGCATGGAATTTTGAAATTTCT
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