CF832447

Overview
NameCF832447
Unique NameCF832447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1014 contig Csv1_Contig1014:43..506. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
[Close]
BLAST of CF832447 vs. ExPASy Swiss-Prot
Match: TN5P_ECOLX (Transposase for transposon Tn5 OS=Escherichia coli GN=tnpA PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 8.740e-84
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = -2 
Query:    2 PRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLLQLR 463
            PRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLLQLR
Sbjct:  214 PRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEEPDNLERMVSILSFVAVRLLQLR 367
The following BLAST results are available for this feature:
BLAST of CF832447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TN5P_ECOLX8.740e-84100.00Transposase for transposon Tn5 OS=Escherichia coli... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01O01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832447 ID=CF832447; Name=CF832447; organism=Citrus sinensis; type=EST; length=464bp
CTCTGAGCTGTAACAGCCTGACCGCAACAAACGAGAGGATCGAGACCATC
CGCTCCAGATTATCCGGCTCCTCCATGCGTTGCCTCTCGGCTCCTGCTCC
GGTTTTCCATGCCTTATGGAACTCCTCGATCCGCCAGCGATGGGTATAAA
TGTCGATGACGCGCAAGGCTTGGGCTAGCGACTCGACCGGTTCGCTGGTC
AGCAACAACCATTTCAACGGGGTCTCACCCTTGGGCGGGTTAATCTCCTC
GGCCAGCACCGCGTTGAGCGTGATATTCCCCTGTTTTAGCGTGATGCGCC
CACTGCGCAGGCTCAAGCTCGCCTTGCGGGCTGGTCGATTTTTACGTTTA
CCGCGTTTATCCACCACGCCCTTTTGCGGAATGCTGATCTGATAGCCACC
CAACTCCGGTTGGTTCTTCAGATGGTCGTACAGATACAACCCAGACTCTA
CGTCCTTGCGTGGG
back to top