CF832454

Overview
NameCF832454
Unique NameCF832454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6148 contig Csv1_Contig6148:428..1277. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832454 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.495e-58
Identity = 111/197 (56.35%), Postives = 135/197 (68.53%), Query Frame = 2
Query:    2 ENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELDEVEFIPAA 592
            EN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +FDGD EDFR +LKDPS API+LD VE+I A+
Sbjct:  132 ENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAEDFRQILKDPSFAPIKLDSVEYIDAS 319          
BLAST of CF832454 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.653e-57
Identity = 110/197 (55.84%), Postives = 134/197 (68.02%), Query Frame = 2
Query:    2 ENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELDEVEFIPAA 592
            EN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +F GD EDFR +LKDPS API+LD VE+I A+
Sbjct:  132 ENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDAS 319          
BLAST of CF832454 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.664e-33
Identity = 83/191 (43.46%), Postives = 115/191 (60.21%), Query Frame = 2
Query:    5 NVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP-XXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELD 568
            +V AN  Y +L+GHSRGG  AF +ALG+A     SI  SAL+GIDPVAG  + +   +P IL++  +SFE  IP               M PCAP + NHE+F+K C  +  AHF A DYGHMD+LDD+  G   + ++  +C NG++ +  MR  V GI  AFLK    G+  + R ++KDPS++P +LD
Sbjct:  124 SVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLKYSLWGEKAEIRLIVKDPSVSPAKLD 311          
BLAST of CF832454 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.155e-26
Identity = 82/202 (40.59%), Postives = 111/202 (54.95%), Query Frame = 2
Query:    8 VEANLNYVALMGHSRGGLIAFGLAL---GYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFS---IPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKD--PSLAPIELDEVEFI 583
            V  NL+  AL GHSRGG  AF +AL   GY++N    +KIS L+GIDPV G      +  PP+L++  +SF+     I                 PCAP   NH +FF+ C      HF AKDYGH+D+LDD+ +G +  + S  LC NG++ R PMRR V G+  +FLKAY +GD  +    +KD      P+E+ E E I
Sbjct:  125 VTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFRECQ-GPAWHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEE-RRPMRRFVGGLVVSFLKAYLEGDDREL-VKIKDGCHEDVPVEIQEFEVI 317          
BLAST of CF832454 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.409e-24
Identity = 71/188 (37.77%), Postives = 102/188 (54.26%), Query Frame = 2
Query:    8 VEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIEL 565
            VE +L  +A+ GHSRGG  AF LALG++ N  + +  SAL+G+DPVAG  SV     P +L++  +SF  SIP                 CAP + +H+QF+  C   + +HF    YGHMD+L++    P    +S  +C    +P+  MRR + GI  AFL AYF  D   +  ++ + SLAP  L
Sbjct:  149 VEGDLEKLAISGHSRGGKSAFALALGFS-NIKLDVTFSALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNHTIS---CAPNHVSHQQFYDECK-ENSSHFVITKYGHMDMLNEFRLSPIAVTMS-LMCAQSFRPKATMRRTLGGIMVAFLNAYFRDDGRQYYAIIANRSLAPTNL 329          
The following BLAST results are available for this feature:
BLAST of CF832454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN1.495e-5856.35Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI1.653e-5755.84Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH1.664e-3343.46Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH1.155e-2640.59Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL2.409e-2437.77Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_01O05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832454 ID=CF832454; Name=CF832454; organism=Citrus sinensis; type=EST; length=851bp
GGAAAATGTTGAAGCTAACCTAAACTACGTTGCTCTTATGGGACACAGTC
GCGGAGGACTAATAGCGTTCGGTCTGGCACTTGGCTATGCAACAAATCCT
CCAGTTAGCATTAAAATTTCAGCATTAGTAGGCATAGACCCAGTTGCCGG
GTTAGCCAGCGTTCATAGTGAACTTGAACCCCCGATTCTCAGTCATGACT
CATTCGAGTTCTCAATTCCTGTTACTGTAATTGGCACCGGACTCGGTGGT
GTGACAAAGTGCATGCAGCCTTGTGCACCGGAAAACAAAAACCATGAGCA
ATTTTTCAAGAGGTGTACATATTCAGATCATGCTCATTTTGATGCTAAGG
ATTATGGTCACATGGACATTTTAGATGATAATCCCCAGGGACCAAAGAAT
TGGGCAATTTCAAAATTTTTGTGCACGAATGGAAAGAAACCAAGGGATCC
CATGAGGAGATGTGTTGCTGGCATTGCTGCGGCTTTTTTGAAGGCCTATT
TTGATGGTGATTGTGAGGATTTCAGGACAATGTTGAAAGACCCTTCTCTT
GCTCCGATAGAGCTTGATGAGGTTGAGTTCATTCCCGCAGCTCGTGCAAA
AGCTTAACCACTGCACCTACCCATTTGGCTCATATGCACTTTCCATTTTG
GGCGGTAAACTTCTCAGAAATGAGGGAAAGCTTAGAAAAACTAAATAATA
TATAATAACGGGACATAATGAGCCTTGCTTANGATGACCTTTTAAGTAAT
GATCATGTTGTTTATTACTGTATTTGGTTTCTTTGTCAGCAGTTTCTTCT
ACATTCAAAATAAACTAGTATTCACGTCTCTCAAGCTTCCAAAAAAAAAA
A
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