CF832549

Overview
NameCF832549
Unique NameCF832549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2803 contig Csv1_Contig2803:2..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.978e-42
Identity = 99/158 (62.66%), Postives = 116/158 (73.42%), Query Frame = -1
Query:  236 MQQNQQHVPMMQPQMLPRGRVFRYPSGRGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSLN 709
            +Q +QQ  PMMQ QM PRGR+FRYP GRG       G G + P   G+           + P+ IGALAS L+NA+PEQQRTMLGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA    AG   +QLASL+L+
Sbjct:  494 IQHSQQQNPMMQQQMHPRGRMFRYPQGRG-------GSGDVPPYDMGN-----------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA----AGGATEQLASLNLS 629          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.257e-24
Identity = 73/154 (47.40%), Postives = 88/154 (57.14%), Query Frame = -1
Query:  251 NQQHVPMMQPQMLPRGRVFRYPSGRGMPDVSMPGVG--GMLPIPYGDMAAMPLRDAPISQPVP--IGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLA 700
            N       Q QML +    R+  G G     M      G++P+P    A          +P P  I  LAS LA ASP++   MLG++LYPLVEQ EP  AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR  A      +  DQ A
Sbjct:  511 NNMQQQFQQQQMLQQN-ASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFA 663          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.096e-23
Identity = 67/139 (48.20%), Postives = 90/139 (64.75%), Query Frame = -1
Query:  299 QQHVPMMQPQMLPRGRVFRY----PSGRGMPDVSMPG--VGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 697
            QQH+   Q          RY     +GR   D S+P   +  ++P+P  D +++  + AP+   +PI  L S+LA+ASP  +  MLGE LYPLVE+ EP   AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct:  510 QQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPI-DASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.590e-19
Identity = 70/183 (38.25%), Postives = 97/183 (53.01%), Query Frame = -1
Query:  230 NQQHVPM--MQPQMLPRGRVF-----RYPSGRGMPDVSMPGVGGMLPIPYGD-MAAMPL----------RDAPISQP---VPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQQAGNPADQLASLSLNDN 700
            N Q +PM  MQ   +P G  +     ++  GRG   V  PG+GG +   YG     +PL          R   + QP    P+G L A AL+ A P+QQ+ MLGE LYP ++  +P+ A K+TGMLLEMD TE+L LLE  EAL+AKV EA+    E ++N + +  A  P +        +N
Sbjct:  550 NFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQV--PGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPAAEKPKEAAQEAPAEEN 730          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.077e-19
Identity = 64/130 (49.23%), Postives = 80/130 (61.54%), Query Frame = -1
Query:  260 RYPSG-RGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPAD 643
            R P+G  G P  +   V G  P+P G  AA P       QP   GAL A+ALA ASPE+Q+ MLGE +YP V   +P+ A K+TGM+LE+  TE+LHLLE  EAL AKV EA+EVL+   Q   AG  A+
Sbjct:  517 RPPTGVNGAPRPAGQPVPGQ-PMPRGP-AARPAGRPEADQP---GALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDSAGAEAE 641          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.296e-18
Identity = 64/141 (45.39%), Postives = 81/141 (57.45%), Query Frame = -1
Query:  260 RGRVFRYPSGRGMPDVSMPGVGGML--PIPYG----DMAAMPLRDAPISQPVPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGN-PAD 658
            RG+V   P G+GM      G GG    P P G    + AA P   A   +  P GAL A AL  A+P QQ+ MLGE LYP ++  +P+ A K+TGMLLEMD TE+L LLE  +AL+AKV EA+ V     + +  G  PAD
Sbjct:  599 RGQVPGMPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQP---AAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEGEAPAD 736          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.538e-17
Identity = 42/83 (50.60%), Postives = 62/83 (74.70%), Query Frame = -1
Query:  257 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQ 505
            AS+LA+A P++Q+ MLGE LYPL+ ++ P  A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+    ++ +   A Q
Sbjct:  544 ASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENSQKSAQQ 626          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.386e-17
Identity = 53/122 (43.44%), Postives = 72/122 (59.02%), Query Frame = -1
Query:  302 RVFRYPSGRGMPDVSMPGVGGMLPIPYGDM---AAMPLRDAPISQPVP-IGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 652
            R+   P+  G  +     VG    +P G +     MP R    + P P  G L A +LA A+P +Q+ MLGE LYPL+ + +P+ A K+TGMLLEMD  E+LHL+ES  AL+ KV EA+ VL
Sbjct:  520 RIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.260e-16
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  239 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSL 505
            AS LA A P++Q+ MLGE +YP++ ++ P  A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL    Q  QA   A + A  SL
Sbjct:  544 ASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVL----QAHQAKENAQKSAQPSL 628          
BLAST of CF832549 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = -1
Query:  248 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLAS 505
            AS LA A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL    Q  QA   A ++ S
Sbjct:  545 ASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL----QAHQAKEAAQKVVS 626          
The following BLAST results are available for this feature:
BLAST of CF832549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PABP2_ARATH2.978e-4262.66Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP5_ARATH1.257e-2447.40Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH3.096e-2348.20Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_EMENI1.590e-1938.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_USTMA2.077e-1949.23Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL2.296e-1845.39Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR2.538e-1750.60Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_CRYNE7.386e-1743.44Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABA_XENLA1.260e-1650.56Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABPB_XENLA1.645e-1651.16Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832549 ID=CF832549; Name=CF832549; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTTAAATCTTCAATGTCACAAATCCTCAAATACCCCTT
GAAACTCTCAACAGTTAAACCCAAAAAAATAAAAATACAAATAAAAACCA
AAACCAAAACAGTAACCTAGCCTATAGAATCATCCACTTCCAAGTCTTAT
AACCGTAACCAAGCCACATCTAGAATAAATTCAAAACTAGCATTTTTGAA
ATACTGCAGCTCGCAACTTAAGAAACCAAGTTATCATTCAATGATAATGA
GGCTAGTTGATCAGCCGGATTACCAGCCTGCTGTTGCTGAGCAACATTCC
TCAGAACCTCCATTGCCTCAGCCACTTTCGCTTTCAGAGCTTCTGGTGAC
TCGAGCAAGTGCAAAACCTCAGTCTGATCCATCTCCAAAAGCATTCCCGT
AACCTTAGCTGCAGCATCAGGCTCCAGCTGTTCTACAAGTGGGTAGAGAT
TCTCTCCCAGCATCGTCCTCTGCTGCTCAGGAGAAGCATTTGCAAGGGCA
GAAGCCAAAGCCCCAATGGGAACTGGCTGTGAAATAGGGGCATCACGCAG
CGGCATAGCAGCCATGTCACCATATGGAATAGGTAGCATCCCTCCGACAC
CAGGCATGGAAACATCTGGCATGCCACGGCCTGACGGGTAGCGGAAGACA
CGCCCCCTTGGAAGCATCTGTGGCTGCATCATTGGAACATGCTGCTGGTT
CTGCTGCATGCCTGCTGCCCGTCTGCCACTAGGACGCTGACCCTGCTGCC
CTGGCTGAGCTATCGGCACAAAAGAAATTTTGCATGGGAC
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