CF832556

Overview
NameCF832556
Unique NameCF832556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832556 vs. ExPASy Swiss-Prot
Match: PP352_ARATH (Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.171e-29
Identity = 62/110 (56.36%), Postives = 75/110 (68.18%), Query Frame = -2 
Query:  310 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTXXXXXXXXXXXXXXXXXXXXIRTIKKKFPPNVLRAWKKVEEELGL 639
            T YC+  M+DEAKKVYEGLE N C+PNA TFRT I+HLC S  +++ Y +FK+SV +HKIPDFNT                    IRT+KKKFPP+ L AWKK+EEELGL
Sbjct:  286 TAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPSFLNAWKKLEEELGL 395
[Close]
BLAST of CF832556 vs. ExPASy Swiss-Prot
Match: PP162_ARATH (Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.139e-23
Identity = 59/126 (46.83%), Postives = 72/126 (57.14%), Query Frame = -2 
Query:  271 TCYCKNEMMDEAKKVYEGLEENGCSPNATTFRTWIYHLCGSGNFDKAYKVFKESVMVHKIPDFNTXXXXXXXXXXXXXXXXXXXXIRTIKKKFPPNVLRAWKKVEEELGLVP---APAVGDGQKAR 639
            T YC   MM EAKKVYEGLE+    PNA TFRT I+HLC +G +D+   VFK+S +VHKIPDF T                     R +KKKFPP ++  WKK+EE+LGL     A AV    + R
Sbjct:  286 TAYCVKGMMSEAKKVYEGLEQ----PNAATFRTLIFHLCINGLYDQGLTVFKKSAIVHKIPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFPPRLVTEWKKLEEKLGLYSKGNAAAVSSSSQTR 407
The following BLAST results are available for this feature:
BLAST of CF832556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP352_ARATH1.171e-2956.36Pentatricopeptide repeat-containing protein At4g36... [more]
PP162_ARATH2.139e-2346.83Pentatricopeptide repeat-containing protein At2g18... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02A18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832556 ID=CF832556; Name=CF832556; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTCCATTGGAATTGAAACTTTTATACTTAATATATAGTGGTT
CAACTTACAGATTTCATTTAAGTTATAGGACGCTTATATATAATTAACCT
CAATCAAGCTCGACATTAGCCTCCGCGGCTGAATTTGCAAACCTAACATC
GCGTTTAAAATAATTCAATCAAATTTAATTGCTTCGCATCCAACATTCAA
ATGATTAATTAACAATCAAAATTCAGATAACCTAATCTCCCAGTAACAGA
AGTTCCATCAATGCTTAAACCCTGGCTTTTTGACCATCACCAACAGCAGG
AGCAGGAACCAACCCCAGCTCCTCCTCAACTTTCTTCCAAGCTCTTAAAA
CATTAGGAGGGAACTTCTTTTTAATAGTCCGAATCACTCCTTTGGCCTCC
TTAATCTTCTTTTTCTTCACCAACCCTTCCACCAAAAGCTTCACCGTATT
AAAATCAGGAATCTTATGCACCATCACACTTTCCTTAAACACCTTATACG
CCTTATCAAAATTCCCACTTCCACACAGATGATATATCCAAGTCCTAAAA
GTCGTAGCATTTGGACTACACCCATTTTCCTCCAATCCCTCGTACACCTT
CTTAGCTTCATCCATCATCTCATTTTTACAATAACAAGTC
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