CF832558

Overview
NameCF832558
Unique NameCF832558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5859 contig Csv1_Contig5859:194..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1L_RAT (tRNA-dihydrouridine synthase 1-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVRGDL 471
            T++YA+MLE AG  LL VHGRT+++K      A W  IKAV+ A+ IPV ANGN+R ++DV++C+++TG +GV+SAE  L NPALF G   A W                +L  EYL +  ++P P   +R+H+ KL     ++   +R +L
Sbjct:  157 TVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW----------------ELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292          
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1L_HUMAN (tRNA-dihydrouridine synthase 1-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.007e-26
Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVRGDL 471
            T++YA+MLE AG  LL VHGRT+++K      A W  IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE  L NPALF G   A W                +L  EYL +  ++P P   +R+H+ KL     ++   +R +L
Sbjct:  157 TVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292          
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1L_MOUSE (tRNA-dihydrouridine synthase 1-like OS=Mus musculus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 61/152 (40.13%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVRGDL 471
            T++YA+MLE AG  LL VHGRT+++K      A W  IKAV+ A+ IPV ANGN++ ++DV++C+++TG +GV+SAE  L NPALF G   A W                +L  EYL +  ++P P   +R+H+ KL     ++   +R +L
Sbjct:  157 TVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292          
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1_SCHPO (tRNA-dihydrouridine synthase 1 OS=Schizosaccharomyces pombe GN=dus1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 1
Query:   16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV-----PWRMIRSHVHKLLGEWFRIQPGVRGDL 471
            T+ YAKM+  AG S+LAVHGR R++K      ADW  I+ ++  L     + ANGN+ H +D+ +C++ TG +GVLSAE  L NP +F           S  ++    +D  D+  EYL +  ++ +         I+ H+ KL+     I   +R  L
Sbjct:  158 TLDYAKMILKAGASILAVHGRLREQKGHFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLP-------PSSPLMTLYPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSIHTDIRSKL 307          
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1_YEAST (tRNA-dihydrouridine synthase 1 OS=Saccharomyces cerevisiae GN=DUS1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 49/162 (30.25%), Postives = 81/162 (50.00%), Query Frame = 1
Query:   16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLV----EYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVRGDLNAQN 483
            ++ YAKM+ DAG   L VHGR R++K  K   A+W  IK +++ L       ANGN+ + ED+ +C+E  G + V+SAE  L NP +F   +T          +K+    + D ++    + +K C++       ++SH  K+L  +      +R  L   N
Sbjct:  170 SLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQTK---------NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRSTLATMN 322          
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: YQI2_CAEEL (Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 OS=Caenorhabditis elegans GN=C45G9.2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13
Identity = 49/169 (28.99%), Postives = 84/169 (49.70%), Query Frame = 1
Query:   16 TIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQP-GVRGDLNAQNRLTFEFLYNLVD 519
            T+   +  E AG + L VHGRT  ++       D  A++ VK+++ +P++ANG +   E+     E+TG +G+++A  LL+NPALFAG                     +D +  +++L  +Y + W +   H+  +L   F  Q   V  +LN +  +   FL NL+D
Sbjct:  135 TVDLCRKAEAAGVTHLTVHGRTPSQRAEP---IDIQALRIVKDSVSVPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHT----------------PSDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQRRVFNELNGRLAID-HFLNNLLD 283          
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1_BACSU (Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis GN=dus1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13
Identity = 50/169 (29.59%), Postives = 89/169 (52.66%), Query Frame = 1
Query:   13 FTIKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY----------PVPWRMIRSHVHKLLGEWFRIQPGVRGDLNAQNRL 489
            F +K A+ +E AG   +A+HGRTR +    +  A+W+ IK VK ++ IPV+ NG+V+  +D ++ L+ETG +GV+   + L NP +   +RT +++       + G L +   + E + +C+ +           V  R +R H       W+    GV+G+ N +N +
Sbjct:  152 FAVKNAQAVERAGGKAVALHGRTRVQM--YEGTANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWMI--YRTVQYL-------ETGKLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKH-----AAWY--LKGVKGNANVRNEI 302          
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS4_SCHPO (tRNA-dihydrouridine synthase 4 OS=Schizosaccharomyces pombe GN=dus4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 35/89 (39.33%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   31 KMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 297
            +++E +G  ++ VHGRTR  +D   F  + +AI+ V+  ++IPV+ANG+V+ +    +  + T  +G++SA  LLENPALFAG+    W
Sbjct:  164 QVIEKSGADIITVHGRTR--QDRSSFPVNLDAIREVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPW 250          
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS1_SYNY3 (Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp. (strain PCC 6803) GN=dus1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   19 IKYAKMLEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGS-EEISKDGNLDQADLLVEYLKLCEKY 384
            +++A+ L+DAG  +L +HGRTR +  G   RA W  I  VK AL IPV+ANG++  +E    CLEETG +GV+ +   L  P          ++VG  E   K G   +A  + E L   +++
Sbjct:  184 VEFAQRLQDAGAQMLTLHGRTRAQ--GYNGRARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYP----------FLVGEIEHFFKTGEKRKAPTVAEKLTCAQEH 294          
BLAST of CF832558 vs. ExPASy Swiss-Prot
Match: DUS_AQUAE (Probable tRNA-dihydrouridine synthase OS=Aquifex aeolicus GN=dus PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   37 LEDAGRSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYL 366
            L+ AG SL+A+H RT   K G   +A W+ IK  K    +P++ +G+V+   D+++  EET C+GV+   + L NP +F  F+    I    +   D  L++  ++ EY+
Sbjct:  155 LQKAGVSLIAIHARTA--KQGFSGKALWHRIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKEFKEKRDIEVGLKERMDFILEELSMMTEYM 262          
The following BLAST results are available for this feature:
BLAST of CF832558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DUS1L_RAT5.901e-2740.79tRNA-dihydrouridine synthase 1-like OS=Rattus norv... [more]
DUS1L_HUMAN1.007e-2640.79tRNA-dihydrouridine synthase 1-like OS=Homo sapien... [more]
DUS1L_MOUSE1.315e-2640.13tRNA-dihydrouridine synthase 1-like OS=Mus musculu... [more]
DUS1_SCHPO3.038e-1533.33tRNA-dihydrouridine synthase 1 OS=Schizosaccharomy... [more]
DUS1_YEAST8.838e-1530.25tRNA-dihydrouridine synthase 1 OS=Saccharomyces ce... [more]
YQI2_CAEEL1.667e-1328.99Uncharacterized tRNA-dihydrouridine synthase-like ... [more]
DUS1_BACSU6.334e-1329.59Probable tRNA-dihydrouridine synthase 1 OS=Bacillu... [more]
DUS4_SCHPO1.080e-1239.33tRNA-dihydrouridine synthase 4 OS=Schizosaccharomy... [more]
DUS1_SYNY31.411e-1236.59Probable tRNA-dihydrouridine synthase 1 OS=Synecho... [more]
DUS_AQUAE5.362e-1232.73Probable tRNA-dihydrouridine synthase OS=Aquifex a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832558 ID=CF832558; Name=CF832558; organism=Citrus sinensis; type=EST; length=669bp
TCCTAATTTGCCTTTACAATCAAATATGCAAAGATGCTAGAGGATGCTGG
GCGCTCTCTTTTAGCTGTCCATGGCCGAACAAGGGATGAGAAAGATGGGA
AGAAATTCCGAGCTGACTGGAATGCCATAAAGGCCGTTAAAAATGCTCTC
AGAATACCAGTCCTTGCTAACGGGAATGTAAGGCACATGGAGGATGTTCA
GAAATGTTTGGAGGAGACTGGATGTGAAGGGGTACTTTCGGCTGAGTCTC
TCCTCGAGAATCCAGCGCTGTTTGCTGGATTTCGAACCGCTGAATGGATA
GTGGGAAGTGAAGAAATTAGTAAAGATGGAAATCTCGACCAGGCAGATCT
ACTTGTGGAGTACCTGAAGCTTTGTGAAAAGTATCCCGTGCCCTGGAGAA
TGATCCGCTCTCATGTACACAAATTGTTGGGGGAGTGGTTTAGGATTCAA
CCCGGTGTTCGAGGGGATCTCAATGCACAGAACAGGTTGACATTTGAATT
TCTTTATAATTTGGTGGATCGACTTAGAGAACTAGGTGTGAGAATTCCAC
TTTATAAGAAGGACGCTGATGATGCAGAGATTCTGGCTGATGATTTGGCT
TCTTGAATTCTCTGCTGCTAGGAAGTTAAATGGGTTTCATTTGCCTGCAG
TTTTGTTTTGTGGTGAAGC
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