CF832563

Overview
NameCF832563
Unique NameCF832563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10472 contig Csv1_Contig10472:772..1369. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.002e-50
Identity = 92/101 (91.09%), Postives = 100/101 (99.01%), Query Frame = -1
Query:  130 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 432
            HESINNRLALVMKSGKYTLGYKTVL+SLRSSKGKLI+++NNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY+RV CLSI+DPGDSDIIK+LPG+
Sbjct:   11 HESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGD 111          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.424e-49
Identity = 91/102 (89.22%), Postives = 99/102 (97.06%), Query Frame = -1
Query:  127 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGEH 432
            HESIN+RLALVMKSGK+TLGYKTVL SLRS+KGKLI+++NNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRV CLSIID GDSDIIKS+PG+H
Sbjct:   11 HESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGDH 112          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.857e-49
Identity = 90/101 (89.11%), Postives = 98/101 (97.03%), Query Frame = -1
Query:  130 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 432
            HE IN+RLALVMKSGKYTLGYK+VL+SLR SKGKLIL+S NCPPLR+SEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI+DPGDSDIIKS+PG+
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.287e-48
Identity = 91/101 (90.10%), Postives = 99/101 (98.02%), Query Frame = -1
Query:  130 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 432
            HE IN+RLALVMKSGKYTLGYK+VL+SLRSSKGKLIL+S+NCPPLR+SEIEYYAMLAKVGVHHYN NNVDLGTACGKYFRVSCLSI+DPGDSDIIKSLPG+
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.868e-48
Identity = 90/101 (89.11%), Postives = 99/101 (98.02%), Query Frame = -1
Query:  130 HESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 432
            HE IN+RLALVMKSGKYTLGYK+VL+SLRSSKGKLIL+S+NCPPLR+SEIEYYAMLAKVGVH YNGNNVDLGTACGKYFRVSCLSI+DPGDSDIIK+LPG+
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGD 111          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30_MAIZE (60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.128e-44
Identity = 83/100 (83.00%), Postives = 95/100 (95.00%), Query Frame = -1
Query:  130 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 429
            ++INN+L LVMKSGKYTLGYKTVLR+LR+SK KL++++NNCPPLRKSEIEYYAMLAKV VHH++GNNVDLGTACGKYFRV CLSIIDPGDSDIIK+ PGE
Sbjct:   12 DNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTPGE 111          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30_ORYSJ (60S ribosomal protein L30 OS=Oryza sativa subsp. japonica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.738e-43
Identity = 81/96 (84.38%), Postives = 92/96 (95.83%), Query Frame = -1
Query:  142 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKS 429
            ++INN+L LVMKSGKYTLGYKTVLR+LR+SK KL+++SNNCPPLRKSEIEYYAMLAKV VHH++GNNVDLGTACGKYFRV CLSIIDPGDSDIIK+
Sbjct:   12 DNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30_WHEAT (60S ribosomal protein L30 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.396e-41
Identity = 78/96 (81.25%), Postives = 90/96 (93.75%), Query Frame = -1
Query:  142 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKS 429
            E+INN+L LVMKSGKYTLGYKTVL++LRSS GKLI+L+NNCPPLRKSEIE YAMLAK+ VHH++GNNVDLGTACGKY+RV CLSI+DPGDSDII +
Sbjct:   12 ENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGDSDIIST 107          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30_RAT (60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.080e-39
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = -1
Query:  136 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 429
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of CF832563 vs. ExPASy Swiss-Prot
Match: RL30_OPHHA (60S ribosomal protein L30 OS=Ophiophagus hannah GN=RPL30 PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.080e-39
Identity = 73/98 (74.49%), Postives = 86/98 (87.76%), Query Frame = -1
Query:  136 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 429
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL++L+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
The following BLAST results are available for this feature:
BLAST of CF832563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL30_LUPLU4.002e-5091.0960S ribosomal protein L30 OS=Lupinus luteus GN=RPL... [more]
RL30_EUPES4.424e-4989.2260S ribosomal protein L30 OS=Euphorbia esula GN=RP... [more]
RL302_ARATH9.857e-4989.1160S ribosomal protein L30-2 OS=Arabidopsis thalian... [more]
RL301_ARATH1.287e-4890.10Putative 60S ribosomal protein L30-1 OS=Arabidopsi... [more]
RL303_ARATH2.868e-4889.1160S ribosomal protein L30-3 OS=Arabidopsis thalian... [more]
RL30_MAIZE1.128e-4483.0060S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=... [more]
RL30_ORYSJ4.738e-4384.3860S ribosomal protein L30 OS=Oryza sativa subsp. j... [more]
RL30_WHEAT3.396e-4181.2560S ribosomal protein L30 OS=Triticum aestivum PE=... [more]
RL30_RAT7.080e-3974.4960S ribosomal protein L30 OS=Rattus norvegicus GN=... [more]
RL30_OPHHA7.080e-3974.4960S ribosomal protein L30 OS=Ophiophagus hannah GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832563 ID=CF832563; Name=CF832563; organism=Citrus sinensis; type=EST; length=597bp
TTTTTTTTTTTTTTTAAGAAAGTGTATCTCGAGGATGTTCAAAAGCAAAT
TTCAATTGAGAAACAGCATTCCACAATTAAACAATCACAACACTAAGATG
CAGGTTTGAACTCTGAATCAGGCTCAGTGCTCTCCCGGAAGTGACTTGAT
GATATCAGAATCACCTGGATCGATAATGCTCAAGCAAGACACACGGAAGT
ACTTTCCACATGCTGTTCCCAAATCGACATTGTTTCCATTGTAGTGGTGT
ACACCAACTTTAGCAAGCATAGCATAGTACTCAATCTCTGATTTTCTCAA
CGGTGGGCAATTATTTGACAAAAGAATCAACTTTCCCTTAGAGCTTCTGA
GAGATCGAAGAACAGTTTTGTAACCAAGAGTGTATTTGCCACTCTTCATC
ACAAGAGCAAGCCTGTTGTTGATGCTCTCATGAGTCTTCTTCGTCTTCTT
GCTTGTAACCATTTTCGACTGTTTGGTTGCCTGGAAAATCAGATGACACA
GAAAATTTAGAGGCAATAGAAAAACATGAAATGGGCTTTAGGGTTTGGTT
TAGAGCTTACACCAAAAAGACTTTGCGGGAGGCGGCAAAGTAACAAA
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