CF832577

Overview
NameCF832577
Unique NameCF832577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8876 contig Csv1_Contig8876:362..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832577 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 8.119e-34
Identity = 69/111 (62.16%), Postives = 83/111 (74.77%), Query Frame = -1
Query:  136 DGLSNLLKCRLPATIRCLFHPSAHVRALSTSVFRDFLHTSSFKSNIEQ----VERNGIHGSSLHYFNIDAINWQADIEKCLTWEAHSRLATGMPIQFFDIAAKELGCTISI 456
            DGLSNLLKCRLPATIRCL HPSAHVRALSTSV RD ++ SS    +       E+NG++  S  +FN  +I+W+ADI+ CL WEAHS L+T MP QF D AA+ELGCTIS+
Sbjct: 1061 DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAARELGCTISL 1171          
BLAST of CF832577 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.069e-29
Identity = 63/109 (57.80%), Postives = 75/109 (68.81%), Query Frame = -1
Query:  139 ADGLSNLLKCRLPATIRCLFHPSAHVRALSTSVFRDFLHTSSFKSN--IEQVERNGIHGSSLHYFNIDAINWQADIEKCLTWEAHSRLATGMPIQFFDIAAKELGCTIS 459
            ADGLSNLLKCRL  TIRCL HPSAHVRALS SV RD L++    S+  I+   RNGI   +        INWQAD+E+C+ WEAHSR ATG+ + F   AAKELGC ++
Sbjct: 1051 ADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLTLAFLTAAAKELGCPLT 1159          
The following BLAST results are available for this feature:
BLAST of CF832577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH8.119e-3462.16Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ2.069e-2957.80Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02B08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832577 ID=CF832577; Name=CF832577; organism=Citrus sinensis; type=EST; length=459bp
TTTTTTTTTTTTTTTTTAAAACCAAATGATATCTTTCCACCCAATTGATC
TGGTTATTACCATCCATAAATCTCACTTGGAAAAATAAATTATAATCACA
AACCTCAAATGACTGCTGTAGGTTATTTTATTTCATATAGATATTGTACA
ACCTAATTCCTTGGCAGCGATATCAAAAAACTGAATCGGCATTCCTGTTG
CAAGTCGGCTATGAGCTTCCCAAGTTAAGCATTTTTCAATGTCAGCTTGC
CAGTTAATTGCATCAATATTGAAGTAGTGTAAGGAAGACCCATGGATGCC
ATTTCTCTCTACTTGCTCAATATTTGATTTGAATGAACTGGTATGTAAAA
AGTCACGAAAAACTGAAGTGCTCAGTGCGCGGACATGGGCACTTGGATGA
AAAAGGCATCGGATCGTTGCAGGTAGACGACACTTTAAAAGGTTTGAAAG
ACCATCTGC
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