CF832578

Overview
NameCF832578
Unique NameCF832578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11314 contig Csv1_Contig11314:696..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832578 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 6.486e-34
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 2 
Query:    5 DGPLNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSNIEQ----VERNGIHGSSLHYFNIDAINWQADIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI 325
            DG  NLLKCRLPATIRCLSHPSAHVRALSTSVLRD ++ SS    +       E+NG++  S  +FN  +I+W+ADI+ CL WEAHS L+T MP QFLD AA+ELGCTIS+
Sbjct: 1061 DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAARELGCTISL 1171
[Close]
BLAST of CF832578 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.653e-29
Identity = 64/109 (58.72%), Postives = 76/109 (69.72%), Query Frame = 2 
Query:    2 ADGPLNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSN--IEQVERNGIHGSSLHYFNIDAINWQADIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTIS 322
            ADG  NLLKCRL  TIRCLSHPSAHVRALS SVLRD L++    S+  I+   RNGI   +        INWQAD+E+C+ WEAHSR ATG+ + FL  AAKELGC ++
Sbjct: 1051 ADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLTLAFLTAAAKELGCPLT 1159
The following BLAST results are available for this feature:
BLAST of CF832578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH6.486e-3463.06Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ1.653e-2958.72Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02B08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832578 ID=CF832578; Name=CF832578; organism=Citrus sinensis; type=EST; length=467bp
TGCAGATGGTCCCTTAAACCTTTTAAAGTGTCGTCTACCTGCAACGATCC
GATGCCTTTCTCATCCAAGTGCCCATGTCCGCGCACTGAGCACTTCAGTT
CTTCGTGACTTTTTACATACCAGTTCATTCAAATCAAATATTGAGCAAGT
AGAGAGAAATGGCATCCATGGGTCTTCCTTACACTACTTCAATATTGATG
CAATTAACTGGCAAGCTGACATCGAAAAATGCTTAACTTGGGAAGCTCAT
AGCCGACTTGCAACAGGAATGCCGATTCAGTTTCTTGATATCGCTGCCAA
GGAATTAGGTTGTACAATATCTATATGAAATAAAATAACCTACAGCAGTC
ATTTGAGGTTTGTGATTATAATTTATTTTTCCAAGTGAGATTTATGGATG
GTAATAACCAGATCAATTGCTTTGAAAGATATCATTTGGTTTTTAAAGAA
AAAAACAAAGAAGAAAA
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