CF832591

Overview
NameCF832591
Unique NameCF832591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:536..967. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 6.079e-30
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            ++TVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP NR+F
Sbjct:  152 KATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.310e-29
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            ++TVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RIF
Sbjct:  151 KATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.940e-29
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            ++TVKFQLKKVLCMGVAVGNLSMEEKQ+FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RIF
Sbjct:  151 KATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +STVKFQLKKVLC+G  VG++ M E Q+ QNV M++NFLVSLLKKNWQN++  Y+KSTMG S RI+
Sbjct:  149 QSTVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKKNWQNLKSAYIKSTMGKSQRIY 214          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            + ++KFQLKKVLCMGVAV N+ M E +I  N+  ++NFLVSLLKKNWQNVRCLY+KSTMG   RI+
Sbjct:  148 KCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIKSTMGKPIRIY 213          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 41/66 (62.12%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQ+KKVLC+ VAVG++ M E+++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  151 KSTIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/66 (62.12%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQ+KKVLC+ VAVG++ M+  ++ QNV +S+NFLVSLLKKNWQNVR L++KS+MGP  R++
Sbjct:  152 KSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSSMGPPQRLY 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/66 (60.61%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            +ST+KFQ+KKVLC+ VAVG++ + E+++  N+ +S+NFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:  152 KSTIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_CANGA (60S ribosomal protein L10a OS=Candida glabrata GN=RPL10A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            RST+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:  152 RSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
BLAST of CF832591 vs. ExPASy Swiss-Prot
Match: RL10A_ASHGO (60S ribosomal protein L10a OS=Ashbya gossypii GN=RPL10A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.830e-19
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 RSTVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 198
            RST+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:  152 RSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
The following BLAST results are available for this feature:
BLAST of CF832591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
R10A3_ARATH6.079e-3093.9460S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH2.310e-2993.9460S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH3.940e-2992.4260S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
RL10A_TRYBR9.728e-2066.6760S ribosomal protein L10a OS=Trypanosoma brucei r... [more]
RL10A_CHLRE9.728e-2066.6760S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
RL10A_DANRE1.271e-1962.1260S ribosomal protein L10a OS=Danio rerio GN=rpl10... [more]
R10AB_DROME1.659e-1962.1260S ribosomal protein L10a-2 OS=Drosophila melanog... [more]
RL10A_XENLA2.167e-1960.6160S ribosomal protein L10a OS=Xenopus laevis GN=rp... [more]
RL10A_CANGA2.830e-1966.6760S ribosomal protein L10a OS=Candida glabrata GN=... [more]
RL10A_ASHGO2.830e-1966.6760S ribosomal protein L10a OS=Ashbya gossypii GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02B16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832591 ID=CF832591; Name=CF832591; organism=Citrus sinensis; type=EST; length=432bp
CGGTCAACAGTGAAGTTCCAATTGAAGAAGGTGCTTTGCATGGGAGTTGC
TGTTGGAAACCTTTCAATGGAGGAGAAGCAGATCTTCCAGAATGTTCAAA
TGAGTGTTAACTTCCTTGTCTCATTGTTGAAGAAAAACTGGCAGAATGTC
AGGTGCCTCTATCTGAAGAGTACCATGGGTCCTTCAAACCGCATCTTTTA
AGAAATTCTGCTTTATGTTGGAGTTTTGTAGGGAAAACCTAGTGTGATCT
TATTATACCCAAAATGTCTTTCTTTGAATGGTCACAACCTGCAATTTTCT
TTTTCTTTTTCTTTTTCTTTTCTGAATTTAATGCACTAGTAATCTTATAA
TATGGTAGACTTGTACGAATTTTTTTGTTGGAGAGATGTTGAATTGAATC
ATGATTGCTTTCTGTTAAAAAAAAAAAAAAAA
back to top