CF832596

Overview
NameCF832596
Unique NameCF832596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig420 contig Csv1_Contig420:57..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_PEA (60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.503e-86
Identity = 157/192 (81.77%), Postives = 179/192 (93.23%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 581
            TILSSETM IP+GV +K+NAK+IEVEGPRGKL R+FKHLNLDF L+TD E GK++LKIDAWFGSRKTSAAIRTALSHV+NLITGVTKG+RYKMRFVYA FPINASI N +KSIEIRNFLGEKKVR+V++LDGV+++RS+KVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKG +V E+
Sbjct:    3 TILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITD-ENGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGAVVVEE 193          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL91_ARATH (60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3)

HSP 1 Score: 314.694 bits (805), Expect = 2.835e-85
Identity = 153/192 (79.69%), Postives = 176/192 (91.67%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 581
            TILSSETM+IP+ V +K++AK+IEVEGPRGKL R+FKHLNLDF L+ D ETGK++LKID+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASI    KSIEIRNFLGEKKVR+VEMLDGVT++RS+KVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEK  IV E+
Sbjct:    3 TILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL92_ARATH (60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.400e-84
Identity = 153/192 (79.69%), Postives = 175/192 (91.15%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 581
            TILSSETM+IP+GV +K+NAK+IEVEGPRGKL+R+FKHLNLDF L+ D  TGKR+LKID+WFGSRKTSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI   +KSIEIRNFLGEKKVR+VEMLDGV ++RS+KVKDE+IL+GNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKG I  E+
Sbjct:    3 TILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_ORYSJ (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3)

HSP 1 Score: 310.842 bits (795), Expect = 4.094e-84
Identity = 152/188 (80.85%), Postives = 175/188 (93.09%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 569
            TIL+SETMEIPEGV V++ AK++ VEGPRGKL+RNFKHLNLDF L+  G    R+L++DAWFG+R+T AAIRTA+SHVQNLITGVTKGYRYKMRFVYAHFPINASI N++ +IEIRNFLGEKKVR+V+ML+GVT+LRS+KVKDEL+LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVS+KGTI
Sbjct:    3 TILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGG----RKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTI 186          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_MOUSE (60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.621e-56
Identity = 112/192 (58.33%), Postives = 139/192 (72.40%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 581
            TILS++T++IPE V++ +  + + V+GPRG L R+F H+N++  L+      K+RL++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    3 TILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_MACFA (60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 113/192 (58.85%), Postives = 138/192 (71.88%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 581
            TILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K+RL++D W+G+RK  A IRT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    3 TILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 110/189 (58.20%), Postives = 137/189 (72.49%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIV 572
            TILS++T++IP+ V V +  + + V+GPRG L R F H+NL+  L+   +   ++L++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+V
Sbjct:    3 TILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVV 188          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 112/192 (58.33%), Postives = 138/192 (71.88%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 581
            TILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K+RL++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    3 TILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_RAT (60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.765e-56
Identity = 112/192 (58.33%), Postives = 138/192 (71.88%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 581
            TILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K+RL++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    3 TILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQPD 191          
BLAST of CF832596 vs. ExPASy Swiss-Prot
Match: RL9_HUMAN (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.765e-56
Identity = 112/192 (58.33%), Postives = 138/192 (71.88%), Query Frame = 3
Query:    6 TILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRRLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 581
            TILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K+RL++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR VYAHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    3 TILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
The following BLAST results are available for this feature:
BLAST of CF832596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL9_PEA1.503e-8681.7760S ribosomal protein L9 OS=Pisum sativum GN=RPL9 ... [more]
RL91_ARATH2.835e-8579.6960S ribosomal protein L9-1 OS=Arabidopsis thaliana... [more]
RL92_ARATH2.400e-8479.6960S ribosomal protein L9-2 OS=Arabidopsis thaliana... [more]
RL9_ORYSJ4.094e-8480.8560S ribosomal protein L9 OS=Oryza sativa subsp. ja... [more]
RL9_MOUSE1.621e-5658.3360S ribosomal protein L9 OS=Mus musculus GN=Rpl9 P... [more]
RL9_MACFA2.117e-5658.8560S ribosomal protein L9 OS=Macaca fascicularis GN... [more]
RL9_ICTPU2.117e-5658.2060S ribosomal protein L9 OS=Ictalurus punctatus GN... [more]
RL9_BOVIN2.117e-5658.3360S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=... [more]
RL9_RAT2.765e-5658.3360S ribosomal protein L9 OS=Rattus norvegicus GN=R... [more]
RL9_HUMAN2.765e-5658.3360S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832596 ID=CF832596; Name=CF832596; organism=Citrus sinensis; type=EST; length=677bp
CGGTGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGGGTGAAA
GTAAAGATAAATGCGAAGATAATAGAAGTAGAAGGACCTAGAGGTAAGCT
TAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGACTGATG
GGGAAACTGGGAAGCGGAGGCTGAAGATCGACGCATGGTTTGGGTCTCGC
AAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCTCAT
CACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACGCTC
ACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAGATC
CGTAACTTTCTTGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGACGG
TGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTGATG
GGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAGAAA
TGCCATGTGAAGAATAAAGATATCAGGAAATTCTTAGACGGGATCTATGT
CAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGTTAGCTTTCAAATTTT
ATGTCACATTATTATCATGAAATTGGTATCAATCTTGCTCTTTTTGCCCT
GTGTTGGGGAAGTCCTTTTATTTTTTT
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