CF832603

Overview
NameCF832603
Unique NameCF832603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6299 contig Csv1_Contig6299:495..1236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.461e-72
Identity = 130/145 (89.66%), Postives = 138/145 (95.17%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPLYRESELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHELDYLLFIVRDV V PNPDEVAE KYV+RE+LKEL++KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL E IDMKTIHKL
Sbjct:  140 SHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.492e-72
Identity = 129/145 (88.97%), Postives = 138/145 (95.17%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPLYRESELI+ENALG RNAAQRKLLDELGI AEDVPVD+F PLGRILYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KYV R+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDH+EKGT++E  DMK+IHKL
Sbjct:   90 SHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVTRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.255e-72
Identity = 130/145 (89.66%), Postives = 139/145 (95.86%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYKAPSDGKWGEHELDYLLFIVRDV+V+PNPDEVAE KYVNREQLKELL+KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMK+IHKL
Sbjct:  142 SHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWGEHELDYLLFIVRDVAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKSIHKL 286          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.615e-71
Identity = 128/145 (88.28%), Postives = 137/145 (94.48%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTP+ R+LYKAPSDGKWGEHELDYLLFIVRDV ++PNPDEVA+ KYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMKTIH L
Sbjct:  146 SHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYKAPSDGKWGEHELDYLLFIVRDVGIHPNPDEVADIKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 8.017e-71
Identity = 124/146 (84.93%), Postives = 138/146 (94.52%), Query Frame = -1
Query:  304 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 741
            SHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKAPSDGKWGEHELDYLLFI+RDV+V+PNPDEVA+ KYVN++QLK+LLRK DAGEEGLKLSPWFRLVV+NFLFKWWDH+EKGTL +  DMKTIHKLT
Sbjct:  164 SHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFIIRDVNVHPNPDEVADVKYVNQDQLKDLLRKVDAGEEGLKLSPWFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 8.863e-70
Identity = 123/145 (84.83%), Postives = 134/145 (92.41%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHE+DYLLFIVRDV + PNPDEVAE KYV+RE+LKEL++KADAG+E +KLSPWFRLVVDNFL KWWDH+EKGT+ E  DMKTIHKL
Sbjct:   89 SHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 233          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 5.745e-69
Identity = 122/145 (84.14%), Postives = 135/145 (93.10%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPLYRESELI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYKAPSDGKWGEHELDYLLFI+RDV+++PNPDEVAE KY+NR+ LKELLRKADA EEG+KLSPWFRLVVDNFLFKWWDH+EKG+L +  DMKTIHKL
Sbjct:  143 SHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWGEHELDYLLFIIRDVNLDPNPDEVAEVKYMNRDDLKELLRKADAEEEGVKLSPWFRLVVDNFLFKWWDHVEKGSLKDAADMKTIHKL 287          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.129e-39
Identity = 77/145 (53.10%), Postives = 109/145 (75.17%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  + YV++E+LKELL+KA  GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + IH++
Sbjct:   87 SHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILFVRKNVTLNPDPNEIKSFCYVSKEELKELLKKAANGE--IKITPWFQIIAETFLFKWWDNLNH--LNQFVDHEKIHRM 227          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.195e-39
Identity = 76/145 (52.41%), Postives = 109/145 (75.17%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + I+++
Sbjct:   87 SHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAETFLFKWWDNLNH--LNQFVDHEKIYRI 227          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.091e-39
Identity = 76/145 (52.41%), Postives = 110/145 (75.86%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPL    EL E +A+GV+ AAQR+L  ELGI  E+V  +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+LKEL++KA +GE  +KL+PWF+++VD FLFKWWD+L    L++ +D + IH++
Sbjct:   87 SHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYKAQSDGIWGEHEIDYILFLKKNVTLNPDPNEIKSYCYVSKEELKELVKKAASGE--VKLTPWFKIIVDTFLFKWWDNLNH--LSQFVDHEKIHRM 227          
The following BLAST results are available for this feature:
BLAST of CF832603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
IDI2_ARATH1.461e-7289.66Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_CAMAC2.492e-7288.97Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_CLABR3.255e-7289.66Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CLAXA1.615e-7188.28Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CAMAC8.017e-7184.93Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI1_ARATH8.863e-7084.83Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI1_CLABR5.745e-6984.14Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI1_MACFA2.129e-3953.10Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_PONAB6.195e-3952.41Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_MESAU8.091e-3952.41Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02B24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832603 ID=CF832603; Name=CF832603; organism=Citrus sinensis; type=EST; length=741bp
TTTTTTTTTTTTTTTATAGAAGAAGCAGATTTTTATTTTTTTACCATCCA
TATGTAATGTCAAAATTACAAACTTAACAATAAAATTCCATAAAAGCAGC
ACATACGAAAAGATAAGGTAACGTCAACAACAAAATGCTAATCTGTGTAG
AACTCTCGCATATCCAAATTTATTGGAATAAAGAAACCGGTGAGAAGATA
CTGTGTACCCTTAATGTCTTGAAGAACTCTCAAATGCCCAAACTTATTGG
AATACAGGTTCCGGCACACAAATACTGTGTTTCAAGGGCCTGCGGCTTTA
TTAAGTCAACTTGTGAATGGTCTTCATGTCAATGACTTCGTTAAGGGTAC
CTTTTTCGAGGTGATCCCACCACTTGAACAAGAAATTGTCCACAACCAGT
CTGAACCAAGGAGACAGCTTCAAACCTTCTTCTCCAGCATCTGCTTTCCT
CAAAAGCTCTTTTAACTGTTCCCGGTTGACATATTTATACTCGGCTACTT
CATCAGGATTTGGGTTAACACTAACATCTCGGACAATGAAAAGTAAGTAG
TCAAGTTCATGCTCCCCCCACTTGCCATCAGAAGGGGCCTTGTACAGAAT
GCGACCCAGTGGAGTGAACTCATCAACTGGCACATCTTCAGCACAAATGC
CCAGCTCATCCAAAAGCTTTCTTTGTGCAGCATTCCTCACCCCAAGAGCG
TTCTCCTCAATAAGCTCAGATTCACGGTACAGAGGATGGCT
back to top