CF832632

Overview
NameCF832632
Unique NameCF832632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3363 contig Csv1_Contig3363:344..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832632 vs. ExPASy Swiss-Prot
Match: MSI4_ARATH (WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.765e-35
Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = -1
Query:  384 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 701
            SAEDGLLNIWDY++V KK ++  ++   PAGLFFQHAGHRDKVVDFHWNASDPW                TLQIWRMSDLIYRP++EV+AELEKFK+HV++C SKP
Sbjct:  405 SAEDGLLNIWDYDRVSKKSDRAAKS---PAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWRMSDLIYRPEEEVVAELEKFKSHVMTCASKP 507          
BLAST of CF832632 vs. ExPASy Swiss-Prot
Match: MSI5_ARATH (WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.339e-32
Identity = 69/105 (65.71%), Postives = 76/105 (72.38%), Query Frame = -1
Query:  387 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 701
            SAEDGLLNIWD ++VGKK E   R T  P GLFFQHAGHRDKVVDFHW+  +PW                TLQIWRMSDLIYRP+DEVL ELEKFK+HV +CTSK
Sbjct:  385 SAEDGLLNIWDCDRVGKKSE---RATKTPDGLFFQHAGHRDKVVDFHWSLLNPWTIVSVSDNCESIGGGGTLQIWRMSDLIYRPEDEVLTELEKFKSHVFTCTSK 486          
The following BLAST results are available for this feature:
BLAST of CF832632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MSI4_ARATH3.765e-3566.04WD-40 repeat-containing protein MSI4 OS=Arabidopsi... [more]
MSI5_ARATH1.339e-3265.71WD-40 repeat-containing protein MSI5 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02C21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832632 ID=CF832632; Name=CF832632; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTCCTTTTGAACATCAATTCTTTCATCAAACTACCCAGGTCA
ACCCACCTTGAATACAATCATTTTGCAGCTTTAAGCAGAGTATGCACAAG
GACTGCCTCAGATTTAAGATCCAAGCAGCTGAAATAGATGATGAGTTTGC
GATAATCCGTGATTCCTAAAGAGCCGAGAGCAGTAATAAAAGATGGTCAG
AAACCTTCATCATACAACCTCATTTCTTGAAACGTATAGTCTACTAAAAT
ACAACTAAATAAAGGATACCAATCAATTTCCAAGTGTCTAGTGTACCCAA
TAGCTCAATAAAGATGATAAACTACAAGAAGTTCTAGACATCTAAACAAG
TGCTCTACGATTTCTTATCACTCGGTTGACTCAAGGCTTTGAAGTACATG
AAATTACGTGGGCCTTGAACTTCTCAAGCTCTGCTAAAACCTCATCTTGC
GGCCGATAGATCAAATCACTCATGCGCCATATCTGCAGTGTTCCTCCTCC
ACCAGTAGAATCGCAGTCATCAGAGACACTAACAACAGTCCATGGATCCG
ATGCATTCCAGTGGAAGTCAACAACTTTGTCCCTGTGCCCAGCATGCTGG
AAAAACAAGCCTGCAGGATAATTAGTGGTTCTTGGCCCCTGCTCCACCTT
TTTACCAACCTTCTCATAGTCCCAAATGTTTAAGAGACCATCCTCTGCAG
A
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