CF832642

Overview
NameCF832642
Unique NameCF832642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832642_ssr233 microsatellite CF832642_ssr233:233..244. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8839 contig Csv1_Contig8839:512..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832642 vs. ExPASy Swiss-Prot
Match: BIP2_TOBAC (Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.607e-11
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = -1 
Query:  254 DYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 349
            DYEEKLKEVEAVCNPIITAVYQRSGGAPG G+
Sbjct:  248 DYEEKLKEVEAVCNPIITAVYQRSGGAPGGGS 279
[Close]
BLAST of CF832642 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.935e-11
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = -1 
Query:  251 DYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 349
            +Y+EKLKEVEAVCNPIITAVYQRSGGAPGAG E
Sbjct:  623 EYDEKLKEVEAVCNPIITAVYQRSGGAPGAGGE 655
[Close]
BLAST of CF832642 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.935e-11
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = -1 
Query:  254 DYEEKLKEVEAVCNPIITAVYQRSGGAPGAGT 349
            DYEEKLKEVEA+CNPIITAVYQRSGGAPG G+
Sbjct:  248 DYEEKLKEVEAICNPIITAVYQRSGGAPGGGS 279
The following BLAST results are available for this feature:
BLAST of CF832642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BIP2_TOBAC7.607e-1193.75Luminal-binding protein 2 (Fragment) OS=Nicotiana ... [more]
BIP2_ARATH9.935e-1190.91Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP1_TOBAC9.935e-1190.63Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02D04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832642 ID=CF832642; Name=CF832642; organism=Citrus sinensis; type=EST; length=349bp
TTTTTTTTTTTTTTTTTAGAAATAAGAAAAGATCCTCCCTTGAAGCTTCA
CATCCAAAAAAACACGCGAAGAAAGGGAACTTCCGCCTCCCTTTTACTTC
TCCTACCACGAGAAAAATTACAGGAAGTACCCTCAGATAATCTAAAAAGC
CTATTTTACTCAATTTTAGCCTCTTGACAGTTTTGGCAATATGGGCAATC
GAAGTAAAAATTCTTTAGAGCTCATCGGGGGAATCATCATCATCCGATGA
TTCAGTGCCAGCACCGGGGGCTCCGCCAGATCTCTGATATACAGCAGTGA
TGATGGGGTTGCAAACGGCTTCAACCTCCTTGAGCTTCTCTTCATAGTC
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