CF832658

Overview
NameCF832658
Unique NameCF832658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832658_ssr44 microsatellite CF832658_ssr44:44..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2997 contig Csv1_Contig2997:13..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832658 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 1.041e-64
Identity = 129/222 (58.11%), Postives = 160/222 (72.07%), Query Frame = 2
Query:   65 MKNFRVXXXXXXXXXXXXXQVAKCQSDSETGVAETEGGDLGIVGEDAQDFG-------DGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSKK 709
            M N RV             QVA+CQSD+E   +  +     +VGE+  D         D  LS  PGV+TVC+FPKNSA++V AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT    NNA++P S QATFPYIFAVS++LQPG FDLVG I+Y+V+  PYQS FYNGTIEVVESGG +S ESVFL+TLGI LL+L GLW + QV++L+KK
Sbjct:    1 MMNLRVLFLALLLLASPLLQVARCQSDAEDHSSLVDD----VVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRLTKK 218          
BLAST of CF832658 vs. ExPASy Swiss-Prot
Match: SSRA_DICDI (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 52/159 (32.70%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  230 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFGLWIHGQVKQLSK 706
            +P   V    IFP N  +  AAG   E+LVG  N+ + ++N+  I AS++ P D S+ +QN T   F  A V     AT  Y F  S++L+P  F L+ S+ Y+     +  TF+N TI + E      ++S FL+ LG+  +   G  ++G++ +  K
Sbjct:   34 TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTINITEKETSFDMDSFFLILLGLGFVGGIGYIVYGKMPKQKK 191          
BLAST of CF832658 vs. ExPASy Swiss-Prot
Match: SSRA_RAT (Translocon-associated protein subunit alpha OS=Rattus norvegicus GN=Ssr1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 54/180 (30.00%), Postives = 82/180 (45.56%), Query Frame = 2
Query:  143 DSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 673
            D E  V E E  DL    E+ +D        +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL
Sbjct:   51 DDEAEVEEDEPTDLAEEKEEEEDVSSEP-EASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTIVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVVVGL 226          
BLAST of CF832658 vs. ExPASy Swiss-Prot
Match: SSRA_PONAB (Translocon-associated protein subunit alpha OS=Pongo abelii GN=SSR1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 2
Query:  143 DSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 673
            D E  V E E  DL  V +  ++   G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL
Sbjct:   51 DDEAEVEEDEPTDL--VEDKEEEDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225          
BLAST of CF832658 vs. ExPASy Swiss-Prot
Match: SSRA_HUMAN (Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 2
Query:  143 DSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 673
            D E  V E E  DL  V +  ++   G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ V+E    +  E++F+     G+ LLV+ GL
Sbjct:   51 DDEAEVEEDEPTDL--VEDKEEEDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGL 225          
BLAST of CF832658 vs. ExPASy Swiss-Prot
Match: SSRA_CANFA (Translocon-associated protein subunit alpha OS=Canis familiaris GN=SSR1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 2
Query:  143 DSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 673
            D E  V E E  DL    E+    G+   SP+   DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ ++E    +  E++F+     G+ LLV+ GL
Sbjct:   51 DDEAEVEEDEPTDLAEDKEEEDVSGEPEASPS--ADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGL 225          
BLAST of CF832658 vs. ExPASy Swiss-Prot
Match: SSRA_BOVIN (Translocon-associated protein subunit alpha OS=Bos taurus GN=SSR1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 53/180 (29.44%), Postives = 82/180 (45.56%), Query Frame = 2
Query:  143 DSETGVAETEGGDLGIVGEDAQDFGDGTLSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVY-EVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTL--GIALLVLFGL 673
            D E  V E E  DL    +  +D   G    +P  DT  +F K       A    + LVG  N G     V ++ AS   P D+   +QN T     N  VP   QATF Y F  ++ +    F LV ++ Y +++ + +Q   +N T+ ++E    +  E++F+     G+ LLV+ GL
Sbjct:   51 DDEAEVEEDEPTDLA--EDKEEDDVSGEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGLGLLVVVGL 225          
The following BLAST results are available for this feature:
BLAST of CF832658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SSRA_ARATH1.041e-6458.11Translocon-associated protein subunit alpha OS=Ara... [more]
SSRA_DICDI2.779e-1732.70Translocon-associated protein subunit alpha OS=Dic... [more]
SSRA_RAT1.744e-1130.00Translocon-associated protein subunit alpha OS=Rat... [more]
SSRA_PONAB1.744e-1130.00Translocon-associated protein subunit alpha OS=Pon... [more]
SSRA_HUMAN1.744e-1130.00Translocon-associated protein subunit alpha OS=Hom... [more]
SSRA_CANFA2.976e-1130.00Translocon-associated protein subunit alpha OS=Can... [more]
SSRA_BOVIN2.976e-1129.44Translocon-associated protein subunit alpha OS=Bos... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02D14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832658 ID=CF832658; Name=CF832658; organism=Citrus sinensis; type=EST; length=709bp
TCACCTTCATCCTATTCCAAAGCGGCGTCGTGTCAATTCAAACAACAAAC
AAACAACCATGGAGATGAAGAATTTTAGGGTTTTCTTCTTCGCTCTCCTC
CTTCTAGCCTCTCCTCTTCTTCAAGTTGCTAAGTGTCAATCGGATTCGGA
AACGGGAGTTGCAGAGACCGAAGGGGGTGATCTTGGGATTGTTGGTGAGG
ATGCTCAAGATTTTGGTGATGGGACTTTAAGCCCTGCTCCAGGAGTGGAT
ACTGTCTGTATCTTCCCTAAAAATAGCGCCCGAGTGGTGGCTGCTGGAGA
AGAAACTGAACTACTGGTTGGGATGAAAAATGATGGGGAGTCAAGCGTGA
ATGTGATTGCAATTCAGGCCAGTGTTCATCTCCCTTTTGATCACAGTCTT
CTGGTTCAAAATCTCACTGGACAGGCCTTTAACAATGCAACTGTGCCGGT
ATCAGCTCAGGCTACTTTCCCATACATTTTTGCTGTCAGCAAGTTCTTGC
AGCCTGGAACTTTTGATCTTGTGGGCTCCATTGTTTATGAGGTAGACCAG
CATCCTTACCAAAGCACCTTCTACAATGGTACCATTGAAGTTGTTGAATC
TGGTGGGTTCATCAGCATTGAGTCCGTTTTTCTTGTTACCCTTGGAATCG
CGCTTCTTGTCCTTTTTGGTTTATGGATTCATGGTCAAGTCAAACAATTG
TCCAAGAAA
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