CF832668

Overview
NameCF832668
Unique NameCF832668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1546 contig Csv1_Contig1546:265..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_PLAOC (50S ribosomal protein L22, chloroplastic OS=Platanus occidentalis GN=rpl22 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 8.179e-47
Identity = 89/126 (70.63%), Postives = 106/126 (84.13%), Query Frame = 1
Query:   19 NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAV 396
            N+ K N   EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN  HNMGFNEA L+I+KAEVNE  + KR +P+A+GR + IKRPTCHIT+VL+D+SLD+EY +
Sbjct:    3 NKIKKNPDTEVYALGQHICMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASHNMGFNEADLIISKAEVNEGPTMKRLKPRARGRSYPIKRPTCHITIVLKDISLDEEYLI 128          
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_BUXMI (50S ribosomal protein L22, chloroplastic OS=Buxus microphylla GN=rpl22 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.181e-45
Identity = 86/123 (69.92%), Postives = 105/123 (85.37%), Query Frame = 1
Query:   28 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAV 396
            K N+ AEV A  +++ MSAHK RRVIDQIRGRSYEE LMILELMPYRACYPIFKL+YSAAAN  HNMGFNEA  VI+KAEVN+ TS K+ +P+A+GR ++IKRPTCHIT+VL+D+ LD++Y +
Sbjct:    3 KKNRDAEVYALGQHICMSAHKARRVIDQIRGRSYEEALMILELMPYRACYPIFKLVYSAAANASHNMGFNEADSVISKAEVNDGTSVKKLKPRARGRSYLIKRPTCHITIVLKDIYLDEKYII 125          
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_CARPA (50S ribosomal protein L22, chloroplastic OS=Carica papaya GN=rpl22 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 4.488e-45
Identity = 85/127 (66.93%), Postives = 104/127 (81.89%), Query Frame = 1
Query:   19 NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAVS 399
            ++ K     +V A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN  HNMGFNE SLV++KAEVNE T+ K+ +P+A+GR + IKRPTCHIT+VL D ++ DEY +S
Sbjct:    3 SKRKKKSDTKVYALGQHIRMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASHNMGFNETSLVVSKAEVNEGTTVKKFKPRARGRSYPIKRPTCHITIVLEDTTVYDEYVIS 129          
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_MORIN (50S ribosomal protein L22, chloroplastic OS=Morus indica GN=rpl22 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 6.481e-44
Identity = 82/123 (66.67%), Postives = 104/123 (84.55%), Query Frame = 1
Query:   22 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 390
            + +TN+  EV A A+Y+ MSAHK RRVIDQIRGRSY ETL+ILELMPYRACYPI KL+YSAAAN  HNM FNEA+L+I+KAEVNE  + K+ +P+A+GR + IKRPTCHIT+VL+D+ +++EY
Sbjct:    4 KRRTNRYTEVYAIAQYISMSAHKARRVIDQIRGRSYAETLIILELMPYRACYPILKLVYSAAANANHNMRFNEANLIISKAEVNEGNTVKKLKPRARGRGYPIKRPTCHITIVLKDLDVEEEY 126          
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_EUCGG (50S ribosomal protein L22, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl22 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 6.481e-44
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 1
Query:   22 RNKTNKK--AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 387
            R K NK    EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN  HNMGFNEASLVI+KAEVNE T+ K+ +P+A+GR + IKRPTCHI +VL+D S  +E
Sbjct:    2 RKKRNKNLYGEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASHNMGFNEASLVISKAEVNEGTTMKKLKPRARGRSYAIKRPTCHIRIVLKDKSFYEE 125          
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_PELHO (50S ribosomal protein L22, chloroplastic OS=Pelargonium hortorum GN=rpl22-A PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 2.463e-43
Identity = 86/123 (69.92%), Postives = 104/123 (84.55%), Query Frame = 1
Query:   28 KTNKK--AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 390
            K NKK   EVSA  +Y+ MS HK RRVIDQIRGRSYEETLMILELMPYRACYPI KLI SAAANG+HNM F+E SL+I+KAEVNE  +AK+ +P+A+G+ + IKR TCHIT+VLRD+SL+++Y
Sbjct:    4 KKNKKRYTEVSALGKYIPMSTHKARRVIDQIRGRSYEETLMILELMPYRACYPILKLISSAAANGIHNMNFDETSLIISKAEVNEGPTAKKFKPRAKGQSYPIKRSTCHITIVLRDISLNEKY 126          
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_POPAL (50S ribosomal protein L22, chloroplastic OS=Populus alba GN=rpl22 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.201e-43
Identity = 82/113 (72.57%), Postives = 98/113 (86.73%), Query Frame = 1
Query:   46 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 384
            E SAS  Y+ MSAHK RR+IDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN  HNMG NEASLVI+KAEVNE  + K+ +P+A+GR ++IKRPTCHI++VL D+S ++
Sbjct:   11 EASASGFYISMSAHKARRIIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASHNMGLNEASLVISKAEVNEGATMKKFKPRARGRSYLIKRPTCHISIVLEDISYEE 123          
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_COFAR (50S ribosomal protein L22, chloroplastic OS=Coffea arabica GN=rpl22 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.222e-42
Identity = 82/118 (69.49%), Postives = 102/118 (86.44%), Query Frame = 1
Query:   37 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 390
            KK EV A  +++ MSA K RRVIDQIRGRSYEETL+ILELMPYRACYPIFKL+YSAAAN  +NM  N+A+L+I+KAEVNE T+ K+ +P+A+GR + IKRPTCHIT+V++D+SLDDEY
Sbjct:    5 KKTEVYALGQHISMSADKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANASYNMSSNDANLLISKAEVNEGTTIKKFKPRARGRSYPIKRPTCHITIVMKDISLDDEY 122          
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_RANMC (50S ribosomal protein L22, chloroplastic OS=Ranunculus macranthus GN=rpl22 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.085e-42
Identity = 81/123 (65.85%), Postives = 100/123 (81.30%), Query Frame = 1
Query:   28 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAV 396
            K++   EV A  +++ MSAHK RRVIDQIRGR YEETLMILELMPYRACYPI KL+YSAAAN  HNMGFNE +L+I++AEVNE T  K+ +P+A+GR   IKRPTCHIT+VL+D+S D +Y +
Sbjct:    3 KSDPDVEVYALGKHIRMSAHKARRVIDQIRGRPYEETLMILELMPYRACYPILKLVYSAAANASHNMGFNETALIISQAEVNEGTITKKLKPRARGRSFAIKRPTCHITIVLQDISKDKKYFI 125          
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_SOLTU (50S ribosomal protein L22, chloroplastic OS=Solanum tuberosum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.556e-42
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 1
Query:   37 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 390
            KK EV A   ++ MSA K RRVIDQIRGRSYEETLMILELMPYRACYPI KL+YSAAAN  +NMG NE +LVI+KAEVNE T+ K+ +P+A+GR   IKR TCHIT+V++D+SLDDEY
Sbjct:    5 KKTEVYALGEHISMSADKARRVIDQIRGRSYEETLMILELMPYRACYPILKLVYSAAANASYNMGSNETNLVISKAEVNEGTTVKKLKPRARGRSFPIKRSTCHITIVMKDISLDDEY 122          
The following BLAST results are available for this feature:
BLAST of CF832668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_PLAOC8.179e-4770.6350S ribosomal protein L22, chloroplastic OS=Platan... [more]
RK22_BUXMI1.181e-4569.9250S ribosomal protein L22, chloroplastic OS=Buxus ... [more]
RK22_CARPA4.488e-4566.9350S ribosomal protein L22, chloroplastic OS=Carica... [more]
RK22_MORIN6.481e-4466.6750S ribosomal protein L22, chloroplastic OS=Morus ... [more]
RK22_EUCGG6.481e-4470.9750S ribosomal protein L22, chloroplastic OS=Eucaly... [more]
RK22_PELHO2.463e-4369.9250S ribosomal protein L22, chloroplastic OS=Pelarg... [more]
RK22_POPAL4.201e-4372.5750S ribosomal protein L22, chloroplastic OS=Populu... [more]
RK22_COFAR1.222e-4269.4950S ribosomal protein L22, chloroplastic OS=Coffea... [more]
RK22_RANMC2.085e-4265.8550S ribosomal protein L22, chloroplastic OS=Ranunc... [more]
RK22_SOLTU3.556e-4270.3450S ribosomal protein L22, chloroplastic OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832668 ID=CF832668; Name=CF832668; organism=Citrus sinensis; type=EST; length=503bp
GGAATATCGCCCCCTAACAACAGAAACAAGACCAACAAGAAGGCAGAAGT
GTCTGCTTCAGCTCGATATCTGCACATGTCTGCTCACAAAGTCCGAAGGG
TAATTGATCAGATTCGCGGACGTTCTTACGAGGAGACGCTTATGATACTG
GAGCTCATGCCTTATCGGGCCTGTTATCCCATTTTCAAACTGATTTATTC
TGCGGCGGCAAATGGTGTTCACAATATGGGCTTCAACGAGGCCAGTTTAG
TCATCGCCAAAGCGGAAGTGAACGAGGCTACTTCTGCTAAAAGACCGAGA
CCTAAAGCTCAAGGGAGGGTTCATATGATCAAAAGACCCACTTGTCATAT
CACTGTTGTGTTAAGAGACATGTCTTTAGATGATGAATATGCGGTTTCCT
AATTACAGATTTCACTTGTATTTCAAGTTTGCTTAGTTATCTTTTGATGT
TTTTCTAATGAGTAACGTCCCGTTCTTTGTTTTTTTTAAAAAAAAAAAAA
AAA
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