CF832672

Overview
NameCF832672
Unique NameCF832672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6335 contig Csv1_Contig6335:278..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832672 vs. ExPASy Swiss-Prot
Match: THIJ_ECOLI (Protein thiJ OS=Escherichia coli (strain K12) GN=thiJ PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.079e-17
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = -1
Query:    1 VKLVADVLIDEAAKLSYDLIVLPGGLGGAQAFAKSEKLVNMLEKQKESNRPYGATCASPALVLEPHGLLKGKKATASPVMCSKLSDQSEIENRVV--VAGNLITSRGPGTFMEFALAIVENFSPRNKALE 384
            VKL+AD  + E A   YD+IVLPGG+ GA+ F  S  LV  +++   S R   A CA+PA VL PH +      T  P +  K+  +  ++ RVV      L+TS+GPGT ++F L I++    R KA E
Sbjct:   51 VKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHE 180          
BLAST of CF832672 vs. ExPASy Swiss-Prot
Match: THIJ_SALTY (Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.139e-17
Identity = 51/130 (39.23%), Postives = 73/130 (56.15%), Query Frame = -1
Query:    1 VKLVADVLIDEAAKLSYDLIVLPGGLGGAQAFAKSEKLVNMLEKQKESNRPYGATCASPALVLEPHGLLKGKKATASPVMCSKLSDQSEIENRVV--VAGNLITSRGPGTFMEFALAIVENFSPRNKALE 384
            VKL+AD  + E A   YD+IVLPGG+ GA+ F  S  LV  +++   S R   A CA+ A VL PH +      T  P +  K+  +  ++ RVV      L+TS+GPGT ++F L I++  + R KA E
Sbjct:   51 VKLLADAPLVEVADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPIGNMTGFPALKDKIPAEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLAGREKAHE 180          
BLAST of CF832672 vs. ExPASy Swiss-Prot
Match: PARK7_CHICK (Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.450e-14
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = -1
Query:   31 VKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLEKQKESNRPYGATCASPALVLEPHGLLKGKKATASPVMCSKLSDQSEI---ENRVVVAGNLITSRGPGTFMEFALAIVE 384
            V +  D  +++A K   YD+IVLPGG  GAQ  ++S  + ++L+ Q+       A CA P  +L  HG+  G K    P+   K+ + +     E+RV   GN++TSRGPGT  EF LAIVE
Sbjct:   50 VLICPDASLEDARKEGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGPTALLA-HGIGFGSKVITHPLAKDKMMNGAHYCYSESRVEKDGNILTSRGPGTSFEFGLAIVE 170          
BLAST of CF832672 vs. ExPASy Swiss-Prot
Match: PARK7_MESAU (Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.234e-13
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = -1
Query:    7 VKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLEKQKESNRPYGATCASPALVLEPHGLLKGKKATASPVMCSKL---SDQSEIENRVVVAGNLITSRGPGTFMEFALAIVENFSPRNKA 384
            V +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +L++Q+       A CA P  +L  H +  G K T  P    K+   S  S  E+RV   G ++TSRGPGT  EFALAIVE  S +  A
Sbjct:   50 VMICPDTSLEDAKKQGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGPTALLA-HEIGFGSKVTTHPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKEAA 178          
BLAST of CF832672 vs. ExPASy Swiss-Prot
Match: PARK7_HUMAN (Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.234e-13
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = -1
Query:    1 VKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLEKQKESNRPYGATCASPALVLEPHGLLKGKKATASPVMCSKLSDQSEI---ENRVVVAGNLITSRGPGTFMEFALAIVENFSPRNKALE 384
            V +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +L++Q+       A CA P  +L  H +  G K T  P+   K+ +       ENRV   G ++TSRGPGT  EFALAIVE  + +  A +
Sbjct:   50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ 180          
BLAST of CF832672 vs. ExPASy Swiss-Prot
Match: PARK7_CERAE (Protein DJ-1 OS=Cercopithecus aethiops GN=PARK7 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.234e-13
Identity = 49/132 (37.12%), Postives = 72/132 (54.55%), Query Frame = -1
Query:    1 VKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLEKQKESNRPYGATCASPALVLEPHGLLKGKKATASPVMCSKLSDQSEI---ENRVVVAGNLITSRGPGTFMEFALAIVENFSPRNKALE 384
            V +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +L++Q+       A CA P  +L  H +  G K T  P+   K+ +       ENRV   G ++TSRGPGT  EFALAIVE  + +  A +
Sbjct:   50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQ 180          
BLAST of CF832672 vs. ExPASy Swiss-Prot
Match: PARK7_BOVIN (Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.612e-13
Identity = 49/122 (40.16%), Postives = 69/122 (56.56%), Query Frame = -1
Query:   31 VKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLEKQKESNRPYGATCASPALVLEPHGLLKGKKATASPVMCSKL---SDQSEIENRVVVAGNLITSRGPGTFMEFALAIVE 384
            V +  D  +++A K   YD++VLPGG  GAQ  ++S  +  +L++Q++      A CA P  +L  H +  G K T  P+   K+   S  S  ENRV   G ++TSRGPGT  EFAL IVE
Sbjct:   50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQEKRKGLIAAICAGPTALLA-HEIGFGSKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSFEFALKIVE 170          
BLAST of CF832672 vs. ExPASy Swiss-Prot
Match: PARK7_RAT (Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.105e-13
Identity = 51/130 (39.23%), Postives = 73/130 (56.15%), Query Frame = -1
Query:    7 VKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLEKQKESNRPYGATCASPALVLEPHGLLKGKKATASPVMCSKL---SDQSEIENRVVVAGNLITSRGPGTFMEFALAIVENFSPRNKA 384
            V +  D  ++EA     YD++VLPGG  GAQ  ++S  +  +L++Q+       A CA P  +L  H +  G K T+ P+   K+   S  S  E+RV   G ++TSRGPGT  EFALAIVE  S ++ A
Sbjct:   50 VVICPDTSLEEAKTQGPYDVVVLPGGNLGAQNLSESALVKEILKEQENRKGLIAAICAGPTALLA-HEVGFGCKVTSHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMA 178          
BLAST of CF832672 vs. ExPASy Swiss-Prot
Match: PARK7_DANRE (Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.591e-13
Identity = 48/123 (39.02%), Postives = 66/123 (53.66%), Query Frame = -1
Query:   31 QVKLVADVLIDEAAKLS-YDLIVLPGGLGGAQAFAKSEKLVNMLEKQKESNRPYGATCASPALVLEPHGLLKGKKATASPVMCSKLSDQSEI---ENRVVVAGNLITSRGPGTFMEFALAIVE 387
            +V +  D  +++A K   YD+++LPGGL GAQ  ++S  +  +L+ Q+       A CA P  +L  HG+  G   T  P    K+         E RV   GN+ITSRGPGT  EFAL IVE
Sbjct:   49 EVMICPDSSLEDAHKQGPYDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGPTALLA-HGIAYGSTVTTHPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTIVE 170          
BLAST of CF832672 vs. ExPASy Swiss-Prot
Match: PARK7_MOUSE (Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = -1
Query:   31 LIDEAAKLSYDLIVLPGGLGGAQAFAKSEKLVNMLEKQKESNRPYGATCASPALVLEPHGLLKGKKATASPVMCSKL---SDQSEIENRVVVAGNLITSRGPGTFMEFALAIVE 363
            L D   +  YD++VLPGG  GAQ  ++S  +  +L++Q+       A CA P  +L  H +  G K T  P+   K+   S  S  E+RV   G ++TSRGPGT  EFALAIVE
Sbjct:   58 LEDAKTQGPYDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPTALLA-HEVGFGCKVTTHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVE 170          
The following BLAST results are available for this feature:
BLAST of CF832672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
THIJ_ECOLI1.079e-1740.00Protein thiJ OS=Escherichia coli (strain K12) GN=t... [more]
THIJ_SALTY3.139e-1739.23Protein thiJ OS=Salmonella typhimurium GN=thiJ PE=... [more]
PARK7_CHICK9.450e-1439.34Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1[more]
PARK7_MESAU1.234e-1339.23Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1... [more]
PARK7_HUMAN1.234e-1337.12Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2[more]
PARK7_CERAE1.234e-1337.12Protein DJ-1 OS=Cercopithecus aethiops GN=PARK7 PE... [more]
PARK7_BOVIN1.612e-1340.16Protein DJ-1 OS=Bos taurus GN=PARK7 PE=2 SV=1[more]
PARK7_RAT2.105e-1339.23Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV... [more]
PARK7_DANRE3.591e-1339.02Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1[more]
PARK7_MOUSE1.782e-1241.23Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02D23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832672 ID=CF832672; Name=CF832672; organism=Citrus sinensis; type=EST; length=387bp
CTCAAGCGCTTTGTTGCGGGGGGAAAAGTTCTCCACAATTGCCAGTGCGA
ACTCCATAAAAGTTCCTGGCCCTCTGCTGGTGATAAGGTTGCCAGCAACC
ACAACCCTGTTTTCGATTTCACTCTGATCTGACAGCTTGCTGCACATGAC
AGGAGAAGCTGTAGCTTTTTTGCCCTTGAGTAAGCCATGGGGCTCCAACA
CTAAAGCTGGGGATGCACATGTAGCACCGTAAGGTCTATTTGATTCCTTT
TGCTTCTCTAGCATATTCACCAATTTCTCTGACTTCGCAAATGCTTGAGC
GCCACCAAGTCCACCTGGCAAGACAATTAAATCATACGAAAGTTTGGCTG
CCTCATCAATGAGCACATCTGCCACTAATTTAACTTG
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