CF832674

Overview
NameCF832674
Unique NameCF832674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:21..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SYNJB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. GN=fabZ PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.034e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 2
Query:  440 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            P V    QI +ILPHR+PFLLVDRV+EY PG  AV +KNVT N+ FF GHFP+RPIMPGVL+VE
Sbjct:   23 PPVFTTEQILEILPHRYPFLLVDRVVEYQPGQRAVGLKNVTFNEPFFQGHFPNRPIMPGVLIVE 86          

HSP 2 Score: 20.7866 bits (42), Expect = 4.034e-20
Identity = 7/12 (58.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  627 LRAMAQVGGLVM 662
            + AMAQ+GG+V+
Sbjct:   85 VEAMAQIGGIVL 96          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SYNJA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain JA-3-3Ab) GN=fabZ PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 2
Query:  440 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            P V   +QI +ILPHR+PFLLVDRV+EY PG  AV +KNVT N+ FF GHFP+RPIMPGVL+VE
Sbjct:   23 PPVFTTDQILEILPHRYPFLLVDRVVEYQPGQRAVGLKNVTFNEPFFQGHFPNRPIMPGVLIVE 86          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SYNY3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechocystis sp. (strain PCC 6803) GN=fabZ PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.996e-19
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  443 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            T   I +I D+LPHR+PF LVDR+I++ PG  AV +KNVTIN+ FFPGH PDRPIMPGVL+VE
Sbjct:   22 TQFTIQEISDLLPHRYPFALVDRIIDFQPGKCAVGLKNVTINEPFFPGHIPDRPIMPGVLIVE 84          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_GEOMG ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=fabZ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.996e-19
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  443 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            TV DIN+I  ILPHR+PFLLVDR++E+ PG   V IKNVTIN+ FF GHFP  PIMPGVL+VE
Sbjct:    3 TVFDINEIMKILPHRYPFLLVDRIVEHVPGERIVGIKNVTINEPFFQGHFPGHPIMPGVLIVE 65          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_ANASP ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena sp. (strain PCC 7120) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.291e-19
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  443 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            T     +I+ +LPHR+PFLLVD++I+Y PG  AV IKNVTIN+  F GHFPDRP+MPGVL+VE
Sbjct:   29 TTFTSEEIQKLLPHRYPFLLVDKIIDYTPGKQAVGIKNVTINEPHFTGHFPDRPLMPGVLIVE 91          

HSP 2 Score: 22.7126 bits (47), Expect = 4.291e-19
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  606 LCPVFSWLRAMAQVGGLVM 662
            L P    + AMAQVGG+VM
Sbjct:   83 LMPGVLIVEAMAQVGGIVM 101          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_ANAVT ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fabZ PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.298e-19
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  443 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            T     +I+ +LPHR+PFLLVD++I+Y PG  AV IKNVTIN+  F GHFPDRP+MPGVL+VE
Sbjct:   23 TTFTSEEIQKLLPHRYPFLLVDKIIDYTPGKQAVGIKNVTINEPHFTGHFPDRPLMPGVLIVE 85          

HSP 2 Score: 22.7126 bits (47), Expect = 4.298e-19
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  606 LCPVFSWLRAMAQVGGLVM 662
            L P    + AMAQVGG+VM
Sbjct:   77 LMPGVLIVEAMAQVGGIVM 95          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_MICAN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Microcystis aeruginosa (strain NIES-843) GN=fabZ PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  443 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            T   + +IR +LPHR+PF LVDR+I+Y PG  AV +KNVTIN+ FFPGH P+RP+MPGVL+VE
Sbjct:   17 TTFTVEEIRQLLPHRYPFALVDRIIDYVPGQKAVGLKNVTINEPFFPGHIPNRPLMPGVLIVE 79          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_GEOUR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacter uraniireducens (strain Rf4) GN=fabZ PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            MDIN+I  ILPHRFPFL+VDR++E  PG   V +KNVTIN+ FF GHFP  P+MPGVL+VE
Sbjct:    1 MDINEIMKILPHRFPFLMVDRIVEMEPGKRCVGLKNVTINEPFFQGHFPGHPVMPGVLIVE 61          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_PROMA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.236e-18
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 2
Query:  440 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            P V+   +I  +LPHR+PF LVDRV+EY PG SA  IKNVTIN+  F GHFP RP+MPGVL+VE
Sbjct:    8 PVVLTNEEIMGLLPHRYPFALVDRVVEYEPGKSATGIKNVTINEPHFQGHFPGRPLMPGVLIVE 71          

HSP 2 Score: 21.557 bits (44), Expect = 1.236e-18
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  606 LCPVFSWLRAMAQVGGLVM 662
            L P    + AMAQVGGL++
Sbjct:   63 LMPGVLIVEAMAQVGGLIV 81          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SYNS9 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9902) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.607e-18
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            V+   QI  +LPHR+PF LVDRVI Y PGVSA AIKN+T+N+  F GHFP+RP+MPGVL+VE
Sbjct:   10 VLTSEQIAGLLPHRYPFALVDRVIAYEPGVSATAIKNITMNEPQFQGHFPERPLMPGVLIVE 71          

HSP 2 Score: 21.557 bits (44), Expect = 1.607e-18
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  606 LCPVFSWLRAMAQVGGLVM 662
            L P    + AMAQVGGL++
Sbjct:   63 LMPGVLIVEAMAQVGGLIV 81          
The following BLAST results are available for this feature:
BLAST of CF832674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_SYNJB4.034e-2068.75(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNJA6.860e-2068.75(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNY31.996e-1966.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GEOMG1.996e-1969.84(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANASP4.291e-1963.49(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANAVT4.298e-1963.49(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_MICAN5.807e-1963.49(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GEOUR7.584e-1967.21(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROMA1.236e-1864.06(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNS91.607e-1866.13(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832674 ID=CF832674; Name=CF832674; organism=Citrus sinensis; type=EST; length=665bp
CTTTTGCCAACTCCTAATCCCATCATTGGTCTCTCCTACTAGTACCCCTA
GACTATCTCGTTAATGTCGCCGCCGACCAACTGCCATGGGTTTGATTTAA
ATGTCTATTCTTACATCTCTGCCTCATTTTATTAGCTAACATATTAATCC
TCAATTGAATCAATAGAATCCAATCTCTCAGTTCTTCTCTCTTACAATGG
CCACTACCCCTGCTGCTTCTTTTGCCAATTCACTTTTATCTCTCAATTCT
CATCGACCAAACCCAAATGCCTCCTCTATTCCAAAACCCAACACTCTCTC
CATCCAATTTGACAAGAAGAAGAATCAACAACAACAGCAGCACCAACGAC
ATGCTCGTTTCACCACATTTTGTTCTTTGGACGCTGAACCCAAAGATCCC
ATCGAAGATAAACCCATCGAACTTCGGTACCAGGCATTTCCTACAGTGAT
GGACATTAACCAGATTCGTGACATTTTGCCACACAGGTTCCCATTTCTTT
TGGTGGATAGAGTTATTGAATACAATCCAGGAGTTTCAGCTGTTGCTATT
AAGAATGTTACTATTAATGATAACTTCTTTCCTGGCCATTTTCCTGATAG
GCCAATTATGCCCGGTGTTCTCATGGTTGAGGGCAATGGCACAGGTTGGT
GGCTTGGTTATGCTG
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