CF832704

Overview
NameCF832704
Unique NameCF832704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1212 contig Csv1_Contig1212:46..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832704 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 9.800e-54
Identity = 102/172 (59.30%), Postives = 133/172 (77.33%), Query Frame = -1
Query:  177 AAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTPLSVSLSRAQSAKSFVTKLRKFRTLKHREYGAIADCLDEMGDTVDRLSKSVQELNPMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLINKFAGKH 692
            A+     +FI++SC  TTYPA+C QSLSAYA +IQ +P++LA T L VSL+R Q A++F+ +L KF+ LK R+Y AI DCL+E+ D++DR+S+S  E+  +  AKG DF + MSNVETWVSAALTDE TC DGF GK ++GK+K SVRAQVV VA+VTSNAL+L+N FA KH
Sbjct:   20 ASAAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKH 191          
BLAST of CF832704 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 49/158 (31.01%), Postives = 88/158 (55.70%), Query Frame = -1
Query:  198 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTPLSVSLSRAQSAKSF--VTKLRKFRTLKHREYGAIADCLDEMGDTVDRLSKSVQELNPMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLI 665
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K   L  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T +SAA+T++ TC DGF        V+ ++    V+V ++ SNAL++I
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLS--QHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of CF832704 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 49/158 (31.01%), Postives = 88/158 (55.70%), Query Frame = -1
Query:  198 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTPLSVSLSRAQSAKSF--VTKLRKFRTLKHREYGAIADCLDEMGDTVDRLSKSVQELNPMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLI 665
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K   L  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T +SAA+T++ TC DGF        V+ ++    V+V ++ SNAL++I
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLS--QHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of CF832704 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.408e-14
Identity = 48/168 (28.57%), Postives = 88/168 (52.38%), Query Frame = -1
Query:  198 VTAAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTPLSVSLSRAQSAKSFVTKL-RKFRTLKHREYGAIADCLDEMGDTVDRLSKSVQELNPMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLI 698
            +T         ++S C ST YP LC  +++A       S +++    L+++    +     V KL  K + L  RE  A+ DCL+ + +T+D L  +V++L+   + K      H  +++T +S+A+T++ TC DGF     + KV+ ++    V+V  + SNAL++I
Sbjct:   51 ITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKS--LRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMI 216          
BLAST of CF832704 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.591e-14
Identity = 45/157 (28.66%), Postives = 88/157 (56.05%), Query Frame = -1
Query:  198 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTPLSVSLSRAQSAKSFVTKL-RKFRTLKHREYGAIADCLDEMGDTVDRLSKSVQELNPMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLI 665
            +RSSC ST YP LC+ ++         S + +    ++++++  +     V KL +K + L  RE  A+ DCL+ + +T+D L ++V++L+     K      H  +++T +S+A+T++ TC DGF     + +V+ ++    ++V  + SNAL++I
Sbjct:   59 LRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKK--TLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMI 213          
BLAST of CF832704 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.768e-13
Identity = 52/164 (31.71%), Postives = 77/164 (46.95%), Query Frame = -1
Query:  183 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTPLSVSLSRAQSAKSFVTKLRKFRTLKHREYGAIADCLDEMGDTVDRLSKSVQELNPM-GRAKGQDFLWHMSNVETWVSAALTDENTCTDGFG--GKPLEGKVKSSVRAQVVNVAQVTSNALSLINKFAG 665
            +++ C +T YP+ C  S+S+   S    P  L    L V++    S   F +KLR       R   AI  C    GD +DRL+ S+  L  + GR         +SNVETW+SAALTD++TC D  G             +   + N  +  SN+L+++ K  G
Sbjct:   77 LKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAIDELSS---FPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSA---SVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILG 234          
BLAST of CF832704 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12
Identity = 49/169 (28.99%), Postives = 80/169 (47.34%), Query Frame = -1
Query:  189 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTPLSVSLSRAQSAKSFVTKLRKFRTLKHREYGAIADCLDEMGDTVDRLSKSVQELNPMGRAKGQDFLWHMSNVETWVSAALTDENTCTDG----------FGGKPLEGKVKSSVRAQVVNVAQVTSNALSLINKF 665
            +R+ C  T YPA CV S+S    S    P  L    L V ++   S      KL +  T   R   +++ C D   D +D ++ ++  +  +G  K       +  ++TW+SAA+TD +TC D           +   P+  K+KS+    +VN  + TSN+L++I KF
Sbjct:  271 LRNVCSVTRYPASCVSSISKLPSSNTTDPEALFRLSLQVVINELNSIAGLPKKLAE-ETDDERLKSSLSVCGDVFNDAIDIVNDTISTMEEVGDGKKILKSSTIDEIQTWLSAAVTDHDTCLDALDELSQNKTEYANSPISLKLKSA----MVNSRKFTSNSLAIIAKF 434          
BLAST of CF832704 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 46/159 (28.93%), Postives = 88/159 (55.35%), Query Frame = -1
Query:  198 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTPLSVSLSRAQSAKSF--VTKLRKFRT-LKHREYGAIADCLDEMGDTVDRLSKSVQELNPMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLI 665
            ++S+C +T +P LC  ++   +   ++   Q  V  LS++++     +++  V +L K R  L  RE  A+ DCL+ M +T+D L  +V++L      K      H+ +++T +S+A+T++ TC DGF     + KV+  +     +V ++ SNAL++I
Sbjct:   66 VKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKS--LKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMI 222          
BLAST of CF832704 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 50/158 (31.65%), Postives = 83/158 (52.53%), Query Frame = -1
Query:  195 IRSSCKSTTYPALCVQSLSAYAPSIQ-QSPRQLAVTPLSVSLSRAQSAKSFVTKLRKFRTLKHREYGAIADCLDEMGDTVDRLSKSVQELNPMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKPLEGKVKSSVRAQVVNVAQVTSNALSLIN 665
            I  +C+ T +P LCV SL  +  S+   S + L    ++++L     A      L  F  +  R   A   C++ + D+VD LS+++  +     AK QD       V TW+SAALT+ +TCT+GF G   +G VK  + A + N++++ SN L++ +
Sbjct:   87 ISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASL-SFVDMPPRARSAYDSCVELLDDSVDALSRALSSV-VSSSAKPQD-------VTTWLSAALTNHDTCTEGFDGVD-DGGVKDHMTAALQNLSELVSNCLAIFS 234          
BLAST of CF832704 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 45/166 (27.11%), Postives = 85/166 (51.20%), Query Frame = -1
Query:  180 TRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTPLSVSLSRAQSAKSFVTKLRKFRTLKHREYGAIADCLDEMGDTVDRLSKSVQELNPMGRAKGQDFLWHMSNVETWVSAALTDENTCTDGFGG-KPLEGKVKSSVRAQVVNVAQVTSNALSLINKFAGK 674
            T+ I  +C  + YP LC+ +L  +  S+     +L     + +L +   A  + +    +  +  R   A   CL+ + D+VD L++++  +  +   +        S+V TW+S+A+T+ +TCTDGF   +   G+VK  V   V +++++ SN L++   FAGK
Sbjct:   72 TQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKAL-YTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDESH------SDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAI---FAGK 227          
The following BLAST results are available for this feature:
BLAST of CF832704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
21KD_DAUCA9.800e-5459.3021 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_CITSI8.111e-1631.01Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI8.111e-1631.01Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME2_ARATH3.408e-1428.57Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH7.591e-1428.66Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_PHAVU3.768e-1331.71Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME26_ARATH4.166e-1228.99Putative pectinesterase/pectinesterase inhibitor 2... [more]
PMEU1_SOLLC5.440e-1228.93Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME34_ARATH5.440e-1231.65Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME61_ARATH3.526e-1127.11Probable pectinesterase/pectinesterase inhibitor 6... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02E17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832704 ID=CF832704; Name=CF832704; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTGCTCATTCACATAAGACTCACTTCCTATAGAGT
ATGGTCAAAATCAACACTCACCCAGAAACTGATGATTATATTTGTACATT
AAAACTAAACCAAAGATAAAAAAGACACAAACCTTTCGCAAAACATTCAC
ACAGCCATATAGTTAACTACGGGTCAGTGTTTCCCAGCAAACTTATTGAT
CAGTGAAAGGGCATTGCTAGTGACCTGAGCAACATTAACAACCTGAGCCC
TAACAGAGGACTTAACCTTACCCTCCAAGGGCTTGCCACCGAACCCATCA
GTACAAGTGTTCTCATCAGTCAAAGCAGCACTAACCCATGTCTCAACGTT
GCTCATGTGCCACAAAAAGTCCTGACCCTTGGCCCGACCCATGGGGTTCA
GCTCCTGAACCGACTTGCTGAGCCGGTCCACAGTGTCACCCATCTCATCT
AAGCAGTCGGCAATTGCCCCATACTCTCTGTGCTTCAGGGTCCTGAACTT
CCTCAGCTTGGTCACGAATGACTTTGCGGATTGGGCCCTGGAGAGGCTCA
CGGACAAGGGTGTGACAGCCAGTTGCCGGGGGCTTTGTTGAATTGATGGG
GCATAAGCTGAGAGAGACTGCACGCATAGCGCTGGATAAGTTGTGGATTT
GCAAGAACTTCTGATAAATCTTGTGTCAGCAATCCCGGCAGCTGTGACCA
AGCTTATAATGGAGAGGAGAGAGAGCAATAGCAAAAGACAGCCTGTTTTT
GCCATGTTTTCAGAAACTAATTAAAAGCTTTCTGCTTG
back to top