CF832710

Overview
NameCF832710
Unique NameCF832710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2005 contig Csv1_Contig2005:102..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.073e-51
Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFGSHVP 351
            FKQE DLEKRRA AARI EKYPDRIPVIVEKA +SDIP IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP GA+MS++YE+KKD+DGFLYVTY GENTFG   P
Sbjct:    6 FKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGFGSP 121          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.160e-48
Identity = 92/113 (81.42%), Postives = 103/113 (91.15%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFGS 342
            FK + D EKR+A A RI EKYPDRIPVIVEKA +S++PNIDKKKYLVP+DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG +MS++YE KKDEDGFLY+TY GENTFG+
Sbjct:    7 FKMDDDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFGA 119          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 92/113 (81.42%), Postives = 103/113 (91.15%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFGS 342
            F+Q+ D EKR+A A RI EKY DR+PVIVEK+ +SDIPNIDKKKYLVPADLTVGQFVYVIRKRI+LSAEKAIFIFVDNVLPPTGA+MS IY++ K+EDGFLYVTY GENTFGS
Sbjct:    6 FRQDHDFEKRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFGS 118          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFGSHV 348
            FK E  LE+R+A A RI EKYPDRIPVIVEKA RSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPPT A+MSAIYE+ KDEDGFLY+TY GENTFG  V
Sbjct:    6 FKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGLFV 120          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFGSHV 348
            FK E  LE+R+A A RI EKYPDRIPVIVEKA RSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV N LPPT A+MSAIYE+ KDEDGFLY+TY GENTFG  V
Sbjct:    6 FKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFGLFV 120          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.504e-46
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK E  LEKR+A AARI EKYPDRIPVIVE+A +SD+P+ID+KKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N+LPPT AIMSAIYE+ KDEDGFLY++Y GENTFG
Sbjct:    6 FKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.711e-45
Identity = 88/112 (78.57%), Postives = 100/112 (89.29%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK E  LE+R+  ++RI EKYPDRIPVIVE+A RSD+PNIDKKKYLVPADLTVGQFVYV+RKRIKLSAEKAIF+FV N LPPT A+MSAIY++ KDEDGFLY+TY GENTFG
Sbjct:    6 FKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.109e-44
Identity = 90/112 (80.36%), Postives = 98/112 (87.50%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK +  LE+R+A A RI EKY DRIPVIVEKA RSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPPT A+MSAIYE+ KDEDGFLY+TY GENTFG
Sbjct:    6 FKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.109e-44
Identity = 90/112 (80.36%), Postives = 98/112 (87.50%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK +  LE+R+A A RI EKY DRIPVIVEKA RSDIP+IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPPT A+MSAIYE+ KDEDGFLY+TY GENTFG
Sbjct:    6 FKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8_PHYIN (Autophagy-related protein 8 OS=Phytophthora infestans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.449e-44
Identity = 89/112 (79.46%), Postives = 98/112 (87.50%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK+E   EKR+A A RI  KYPDRIPVI EKA RSDIP+IDKKKYLVPADLTVGQFVYVIRKRIKLS EKAIFIF++NVLPPT A+MS IYE++KD DGFLY+TY GENTFG
Sbjct:    4 FKKEHPFEKRQAEAQRIRSKYPDRIPVICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPTAALMSNIYEEQKDVDGFLYITYSGENTFG 115          
The following BLAST results are available for this feature:
BLAST of CF832710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8F_ARATH6.073e-5186.21Autophagy-related protein 8f OS=Arabidopsis thalia... [more]
ATG8E_ARATH2.160e-4881.42Autophagy-related protein 8e OS=Arabidopsis thalia... [more]
ATG8G_ARATH1.829e-4781.42Autophagy-related protein 8g OS=Arabidopsis thalia... [more]
ATG8C_ORYSJ1.185e-4681.74Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI1.185e-4681.74Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8D_ARATH4.504e-4680.36Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8C_ARATH1.711e-4578.57Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ1.109e-4480.36Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI1.109e-4480.36Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8_PHYIN1.449e-4479.46Autophagy-related protein 8 OS=Phytophthora infest... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02E20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832710 ID=CF832710; Name=CF832710; organism=Citrus sinensis; type=EST; length=683bp
TACTTCAAGCAAGAGCTTGATCTTGAGAAGAGACGCGCATAGGCTGCAAG
GATTATGGAGAAGTACCCTGACAGGATTCCGGTGATTGTGGAGAAGGCAC
ATAGAAGTGACATACCAAATATAGATAAGAAGAAGTATCTTGTTCCAGCT
GACCTGACTGTAGGACAATTTGTCTATGTCATCCGTAAAAGGATCAAACT
GAGTGCTGAAAAGGCGATATTTATTTTTGTGGATAATGTGCTCCCACCTA
CAGGTGCTATTATGTCTGCCATATACGAACAGAAAAAGGATGAAGATGGT
TTTCTTTATGTGACTTACAGGGGGGAGAACACATTTGGAAGCCACGTCCC
AGTTTACCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTTGTGCGA
CCGCATTTTTATCTCAATTGTCATCCTTGCTTTCCGCTGAATATTCCTTT
ATCGGGCATATTTTATATTTTATAAAGACATTGCCAGTGATAATATGTAC
AGTTACCTATTGTATATAATTCTTACAGGCATAATATGTCAAGTTTCTTT
CTTGCCTTTCTATTTTGATGATTTTTTTTCGGTTAGGGTATTTGCTGCTG
GTTTCGATCTGTAATCTTTATCACGAAATACTTGACTTGGAACCCGGATT
CTGCGTGTTTGTGAGCCATTGCTATTTTTAAGA
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