CF832726

Overview
NameCF832726
Unique NameCF832726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26
Identity = 74/196 (37.76%), Postives = 105/196 (53.57%), Query Frame = 2
Query:    5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESLDSSAI---------CYQR---------LNEEMVRSCHQLM-----EEYLIDTCPSAQVKDQSVEPQVAPPSPVGVLDA 523
            LP    W  QLL+V+CLSLA+KMEET VP ++DLQ+ DP+FVFE KT++RMEL V++ LNWRL ++TPF ++ YF+ K+    SE       ++ SS  I+ TT+          E   ++A+         C            + +E V+ C  LM     EE +  T  S   +   V  +  P SPVGVL+A
Sbjct:  134 LPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDKISGHVSE-----NLIYRSSRFILNTTKAIEFLDFRPSEIAAAAAVSVSISGETECIDEEKALSSLIYVKQERVKRCLNLMRSLTGEENVRGT--SLSQEQARVAVRAVPASPVGVLEA 322          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26
Identity = 79/203 (38.92%), Postives = 107/203 (52.71%), Query Frame = 2
Query:    5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESLDSSA--------ICYQRLNEEMVRSCHQLMEEY-LIDTCPSAQVKDQSVEPQVAPPSPVGVLDAAACGSCDTRSDNPGSSNQVEA 586
            LP    W  QLL+VACLSLAAKMEET VP  LDLQ+ + R+VFE KT+QRMEL V+S L WR+ ++TPF Y+ YF+ +L       G   R    SS+LI+   R          E   + A          +  +N+E +  C ++++   LI   PS+    +       P SP GVLDAA C S   RSD+   ++   A
Sbjct:  140 LPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSG---RSALLSSELILCIARGTECLGFRPSEIAAAVAAAVVGEEHAAFSHVNKERMSHCQEVIQAMELIHPKPSS--PSRVFVSSSIPRSPTGVLDAAGCLS--YRSDDSAVASHYAA 335          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26
Identity = 82/235 (34.89%), Postives = 118/235 (50.21%), Query Frame = 2
Query:    5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGE--------------------SLDSSAICYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVAPPSPVGVLDAA---------ACGSCDTRSDNPGSSNQVEAELCAKRLRSSAP 622
            LP    W  QLLSV+CLSLA KMEET VPL +DLQ+FD  +VFE + ++RMEL VM  L WRL ++TPF ++ YF+ K   +  +P S+T   W  SDL + T +          E                    +L  S I    +N+EMV  C++LM E  +      ++++ +    V P SP+ VLDAA           GS  + S+N   ++Q  A    +R  ++ P
Sbjct:  132 LPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKF--NEGKPPSYTLASW-CSDLTVGTLKDSRFLSFRPSEIAAAVVLAVLAENQFLVFNSALGESEI---PVNKEMVMRCYELMVEKAL----VKKIRNSNASSSV-PHSPITVLDAACFSFRSDDTTLGSSQSNSNNKDYNSQDSAPASKRRRLNTTP 355          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 77/210 (36.67%), Postives = 108/210 (51.43%), Query Frame = 2
Query:    5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESL----------------DSSAICYQRLNEEMVRSCHQLMEE--YLIDTCPSAQVK-------DQSVEPQVAPPSPVGVLDAAACGSCDTRSDN 559
            LP    W  QLLSVACLS+AAKMEET VP  LDLQI +PRF+FE +T+ RMEL V++ LNWR+ ++TPF Y+ YF+ KL + ++ P S   +L  SS+LI+R             E                  +  A  +  +++  V  C + +++  Y + T  + Q K         S      P SPV VLDA   G    +SD+
Sbjct:  147 LPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRS---WLLRSSELILRIAAGTGFLEFRPSEIAAAVAATVAGEATGVVEEDIAEAFTHVDKGRVLQCQEAIQDHHYSMATINTVQPKPASTRRGSASASSSSVPESPVAVLDA---GCLSYKSDD 350          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD41_ARATH (Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 71/194 (36.60%), Postives = 100/194 (51.55%), Query Frame = 2
Query:    5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESLDSSAI------------------CYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVAPPSPVGVLDAAAC 532
            LP   GW LQLL+VACLSLAAK+EET+VP+L+DLQ+ DP+FVFE K+VQRMEL V++ L WRL +ITP  Y+ YF+ K+     EP +    +  S  +I  TT+          E   + A+                   +  L +E V+   +++E    D C                 +P GVL+ +AC
Sbjct:  115 LPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSN--TLISRSLQVIASTTKGIDFLEFRPSEVAAAVALSVSGELQRVHFDNSSFSPLFSLLQKERVKKIGEMIESDGSDLCSQ---------------TPNGVLEVSAC 291          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD31_ORYSJ (Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 76/220 (34.55%), Postives = 113/220 (51.36%), Query Frame = 2
Query:    5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESLDSSAI----------------CYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVA-PPSPVGVLDAAACGSCDTRSDNPGS-SNQVEAELCAKRLR 610
            LP       QLL+VA LSLAAKMEET VP  LDLQ+ D ++VFE +T++RMEL V++ L WR+ ++T   ++ Y++ K    + +    T  L  S DLI+ T +          E   S A+                CY+ L +E V  C++++++ +I       +  QS     + P SP+GVLDAAAC S  +     GS +   E+   +KR R
Sbjct:  127 LPQEEACMTQLLAVASLSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWRMQAVTACSFIDYYLHKF---NDDDTPSTSALSRSVDLILSTCKVAEFLVFRPSEIAASVALVALEEHETSMFERVATCYKNLKKERVLRCYEMIQDKII----MRNIMRQSAGSVFSIPKSPIGVLDAAACISQQSEDTFVGSPATNYESSASSKRRR 339          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD42_ARATH (Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTR 319
            LP    W +QLL+VACLSLAAK+EET VP L+ LQ+  P FVFE K+VQRMEL V++VL WRL ++TP  Y+ YF+SK+     EP S  R +  S  +I  TT+
Sbjct:  106 LPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFEAKSVQRMELLVLNVLRWRLRAVTPCSYVRYFLSKINGYDQEPHS--RLVTRSLQVIASTTK 208          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 2
Query:    5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLII 307
            LP ++GWP+QLL+VACLSLAAKMEE  VP L D Q+   +++FE KT++RMEL V+SVL+WRL S+TPFD++ +F  K+  S    G+F  F  S +  II
Sbjct:  119 LPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPS----GTFLGFFISHATEII 215          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 67/221 (30.32%), Postives = 112/221 (50.68%), Query Frame = 2
Query:   23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSF--------------TRFLWSSSDLIIRTT--RXXXXXXXXXGESLDSSAICYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVAPPSPVGVLDAAACGSCDTRSDNPGSSNQVEAELCAKRLRSSAPDVQQP 637
            W LQL+SVACLSLAAK+EETQVPLLLD Q+ + ++VFE KT+QRMEL ++S L W+++ ITP  ++ + I +L   ++    F              +RF+     ++   T  R           S  ++ +    L +E V++C+ L+ +  +D     Q++ QS + + +  S   +   +     +  + +  S++   A  C     SS+P  Q P
Sbjct:  130 WMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPSVVAAATMMRIIEQVDPFDPLSYQTNLLGVLNLTKEKVKTCYDLILQLPVDRI-GLQIQIQSSKKRKSHDSSSSLNSPSCVIDANPFNSDESSNDSWSASSCNPPTSSSSPQQQPP 349          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD21_ORYSJ (Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 2
Query:    5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISK 238
            LP   GW +QLL+VACLSLAAKMEET VP LLDLQ+   R+VFEP+T+ RME  +++ LNWRL S+TPF ++ +F  K
Sbjct:  119 LPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQVECSRYVFEPRTICRMEFLILTALNWRLRSVTPFTFIDFFACK 196          
The following BLAST results are available for this feature:
BLAST of CF832726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CCD21_ARATH1.857e-2637.76Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=... [more]
CCD41_ORYSJ2.426e-2638.92Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD22_ORYSJ2.426e-2634.89Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD42_ORYSJ2.054e-2536.67Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD41_ARATH2.682e-2536.60Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=... [more]
CCD31_ORYSJ6.606e-2434.55Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD42_ARATH2.510e-2353.33Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=... [more]
CCD11_ARATH5.592e-2353.47Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=... [more]
CCD31_ARATH1.055e-2130.32Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=... [more]
CCD21_ORYSJ2.350e-2160.26Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832726 ID=CF832726; Name=CF832726; organism=Citrus sinensis; type=EST; length=699bp
TTTTCTCCCGCTATCAAATGGGTGGCCGCTTCAGCTACTGTCAGTTGCGT
GCTTGTCTTTAGCGGCGAAAATGGAAGAAACCCAAGTGCCCCTGTTATTG
GATCTTCAAATATTTGACCCGAGATTCGTATTTGAACCCAAAACCGTTCA
AAGAATGGAGCTCCGAGTCATGTCAGTTCTCAATTGGAGACTCAATTCCA
TCACCCCGTTTGATTATCTTCATTACTTCATCTCAAAACTACCCGCTTCC
AGCTCCGAACCCGGCTCGTTTACCCGATTTTTATGGTCCTCTTCGGATCT
CATTATCAGAACCACCCGTGCAGCGGCGGCGGTTTTATGTGCCGCCGGTG
AAAGCTTAGACTCATCGGCGATTTGTTATCAGAGACTGAACGAAGAAATG
GTGAGAAGCTGTCACCAACTCATGGAGGAGTATCTGATCGACACCTGTCC
ATCAGCTCAGGTTAAGGACCAGAGCGTGGAGCCGCAAGTCGCGCCTCCAA
GCCCAGTTGGTGTGCTGGACGCGGCTGCTTGTGGAAGTTGCGACACGCGC
TCGGACAATCCCGGCTCCAGTAACCAAGTCGAAGCCGAGCTGTGTGCTAA
GCGGTTACGATCCTCTGCCCCGGATGTACAGCAACCGTAGATAAGACCGC
CCCCCATCACCCTCCCCTATTATTATTTCTCAACTAGCTTTTTGTGTCT
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