CF832729

Overview
NameCF832729
Unique NameCF832729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7030 contig Csv1_Contig7030:229..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832729 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 1.085e-49
Identity = 93/126 (73.81%), Postives = 107/126 (84.92%), Query Frame = -1 
Query:  204 AFEEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 581
            AF+EVN+ LQTKFSQEPEPIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEA             EIA+V+E+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct:   43 AFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
The following BLAST results are available for this feature:
BLAST of CF832729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH1.085e-4973.81ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02F06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832729 ID=CF832729; Name=CF832729; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTGCCCAAAAACTGAATGTTTAACATAAATGCCCT
TAAAGCTCAAATTTTGAAACCATGAGCAACAGGTTTATCCAAAAACAATT
CGAATGATCATTATTATTTAACAAGCTGGGAAAACAGGGCAACTTCAGAA
AATCTTGGCCGACCTAGGAAATGCAGCTGCTAAATTGAGCAAATGTGTGA
TCAATAGCCCCAGTAGTCATTCCTGATTTCATCATCGAACTTCTTTTTGA
GTTCCGGATGCTTTTCAAAGTATTCCTCAGCGGTCATGGTGCTGATCTTT
TCCTTCAGTTCTCGAACCTCAGCTATTTCTTTCTCCAAACGCTCGGACTC
CTTAAGAGATTTCCCTTCTGCTTCTTTCAATTCCACCAGCAAAGCATCAA
ACTTAGATTTGTATTCAGGGGTGACTTTGTCTACATACTTTGGGACCTCT
ATGCTTTCATAAGCCTGTTTGTACATGTCCACCAAGCGAGAGCCAATTCC
TTTTCTGTAATACTCCCAGTCAATAGGTTCAGGTTCCTGGCTGAACTTGG
TCTGAAGAGTGGAGTTGACTTCCTCGAAAGC
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