CF832766

Overview
NameCF832766
Unique NameCF832766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_ARATH (COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 8.753e-68
Identity = 122/172 (70.93%), Postives = 144/172 (83.72%), Query Frame = -3
Query:  147 MLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPSKLQRLTEYVFPREH 662
            ML+VA+EGI + D+WPY IHLLGY+YV+D +SARFLWK IP+ IK+ + EVVAAW IGQ LWT DYAGVY+AIRG+DWSQEA+ +VAAFS+LYTKRMFQLLLSAYSTI+  D ALFLGM EDDA  YV + GWT+D AS+M +VKKQ +  EQK+D SKLQRLTEYVF  EH
Sbjct:   26 MLQVASEGIEYHDDWPYAIHLLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTKRMFQLLLSAYSTITIHDLALFLGMTEDDATTYVVENGWTVDAASQMASVKKQAVKREQKVDSSKLQRLTEYVFHLEH 197          
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_XENLA (COP9 signalosome complex subunit 8 OS=Xenopus laevis GN=csn8 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.288e-26
Identity = 64/165 (38.79%), Postives = 97/165 (58.79%), Query Frame = -3
Query:  162 AAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPS--KLQRLTEYV 650
            A  GIA    +  ++ L  Y   ND+N+AR+LWK IPS IK S +E+   W++GQ +W RD+ G+Y +I  + WS+  Q ++ A  +   +R F L+  AY++IS  D A F+G+  ++A   V +QGW  D A+ M+  KK P      L P+  +L RLT+YV
Sbjct:   29 APGGIASPQVYNQLLAL--YLLHNDLNNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPGIYTSISAYQWSENIQQIMEAVRDATQQRAFGLVSQAYTSISADDFAAFVGLPVEEAVKGVLEQGWQADSATGMVMPKK-PDSAPLSLIPNEQQLARLTDYV 190          
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_DANRE (COP9 signalosome complex subunit 8 OS=Danio rerio GN=cops8 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.150e-25
Identity = 56/148 (37.84%), Postives = 86/148 (58.11%), Query Frame = -3
Query:  162 LLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKK-QPLVTEQKLDPSKLQRLTEYV 602
            L+ Y   ND+N+AR+LWK IP  IK +  E+ A W +GQ +W RD+ G+Y AI  + WS+    ++ A  E   +R + L+  AY++IS +D A F+G + ++A   V   GW  DP +RM+  +K  P       +  +L RLT+YV
Sbjct:   39 LVLYLLHNDMNNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSESILPVMEALRESTRRRAYGLVAQAYTSISAEDFAAFVGYSVEEAVKGVVSHGWQADPNTRMIMPQKPDPPPVSLVPNEQQLARLTDYV 186          
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_XENTR (COP9 signalosome complex subunit 8 OS=Xenopus tropicalis GN=csn8 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.017e-25
Identity = 63/165 (38.18%), Postives = 97/165 (58.79%), Query Frame = -3
Query:  162 AAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPS--KLQRLTEYV 650
            A  GIA    +  ++ L  Y   ND+N+AR+LWK IP  IK + +E+   W++GQ +W RD+ G+Y +I    WS+  Q ++ A  +   +R F L+  AY++IS  D A F+G++ ++A   V +QGW  D A+RM+  KK P      L P+  +L RLT+YV
Sbjct:   27 APGGIANPQVYSQLLAL--YLLHNDMNNARYLWKRIPPAIKSAHSELGGIWEVGQKIWQRDFPGIYTSISACQWSEAIQPVMEAVRDATRRRAFGLVSQAYTSISADDFAAFVGLSVEEAVKGVIEQGWQADLATRMVMPKK-PDSAPLSLIPNEQQLARLTDYV 188          
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_RAT (COP9 signalosome complex subunit 8 OS=Rattus norvegicus GN=Cops8 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = -3
Query:  162 YYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYV 593
            Y   ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   V +QGW  D  +RM+  +K              PL     + P     +L RLT+YV
Sbjct:   44 YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPAPGALDVSLNRFIPLSEPAPVPPIPNEQQLARLTDYV 204          
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_MOUSE (COP9 signalosome complex subunit 8 OS=Mus musculus GN=Cops8 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = -3
Query:  162 YYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYV 593
            Y   ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   V +QGW  D  +RM+  +K              PL     + P     +L RLT+YV
Sbjct:   44 YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPASGTLDVSLNRFIPLSEPAPVPPIPNEQQLARLTDYV 204          
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_PONAB (COP9 signalosome complex subunit 8 OS=Pongo abelii GN=COPS8 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.120e-22
Identity = 57/170 (33.53%), Postives = 88/170 (51.76%), Query Frame = -3
Query:  162 PYVIHLLGYYYV-NDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYV 617
            P    LL  Y + ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   + +QGW  D  +RM+  +K              PL     + P     +L RLT+YV
Sbjct:   35 PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIVADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYV 204          
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_HUMAN (COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.120e-22
Identity = 57/170 (33.53%), Postives = 88/170 (51.76%), Query Frame = -3
Query:  162 PYVIHLLGYYYV-NDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYV 617
            P    LL  Y + ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   + +QGW  D  +RM+  +K              PL     + P     +L RLT+YV
Sbjct:   35 PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYV 204          
The following BLAST results are available for this feature:
BLAST of CF832766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CSN8_ARATH8.753e-6870.93COP9 signalosome complex subunit 8 OS=Arabidopsis ... [more]
CSN8_XENLA8.288e-2638.79COP9 signalosome complex subunit 8 OS=Xenopus laev... [more]
CSN8_DANRE3.150e-2537.84COP9 signalosome complex subunit 8 OS=Danio rerio ... [more]
CSN8_XENTR7.017e-2538.18COP9 signalosome complex subunit 8 OS=Xenopus trop... [more]
CSN8_RAT8.577e-2334.16COP9 signalosome complex subunit 8 OS=Rattus norve... [more]
CSN8_MOUSE8.577e-2334.16COP9 signalosome complex subunit 8 OS=Mus musculus... [more]
CSN8_PONAB1.120e-2233.53COP9 signalosome complex subunit 8 OS=Pongo abelii... [more]
CSN8_HUMAN1.120e-2233.53COP9 signalosome complex subunit 8 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02G11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832766 ID=CF832766; Name=CF832766; organism=Citrus sinensis; type=EST; length=664bp
TTTTTTTAGAATAAATCATACAATTGCTATTTCCACTTTTAACGAAAGAT
CCGAGTTCTAAATGCTTTGAAAGCATCCCCTGTCCAGAATCAAAAGTTGA
TTTCACAAGAGAATTGACAGTTTCGGCTGTTCAAGAAGTTAAATTAATGT
TCCCGGGGGAACACGTATTCTGTCAAGCGCTGCAGTTTGCTGGGATCTAG
TTTCTGCTCTGTCACAAGAGGCTGCTTCTTCACGGTCAACATTCGAGAAG
CAGGATCCAAAGTCCAACCTTGCTGTTGTACATAATATGCGGCATCATCC
TCATTCATTCCCAGAAAGAGAGCTGTGTCTTGGGTGCTTATTGTCGAATA
AGCGGACAGAAGCAGCTGAAACATCCTCTTGGTGTAGAGCTCTGAGAAAG
CAGCAACAAGAGCTTGTGCTTCTTGACTCCAATCAAACCCACGAATGGCA
TCATAAACACCCGCATAATCCCGTGTCCAAAGATGCTGACCAATTTTCCA
AGCTGCAACCACTTCTGCCCTGCTATCCTTAATCGTCGAAGGTATTGATT
TCCAAAGGAAGCGTGCACTGTTAATATCATTGACATAATAGTAACCGAGG
AGATGAATCACGTAAGGCCATTCGTCTTGAAACGCAATACCCTCTGCAGC
AACCTTGAGCATTA
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