CF832766
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_ARATH (COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8 PE=1 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 8.753e-68 Identity = 122/172 (70.93%), Postives = 144/172 (83.72%), Query Frame = -3 Query: 147 MLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPSKLQRLTEYVFPREH 662 ML+VA+EGI + D+WPY IHLLGY+YV+D +SARFLWK IP+ IK+ + EVVAAW IGQ LWT DYAGVY+AIRG+DWSQEA+ +VAAFS+LYTKRMFQLLLSAYSTI+ D ALFLGM EDDA YV + GWT+D AS+M +VKKQ + EQK+D SKLQRLTEYVF EH Sbjct: 26 MLQVASEGIEYHDDWPYAIHLLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTKRMFQLLLSAYSTITIHDLALFLGMTEDDATTYVVENGWTVDAASQMASVKKQAVKREQKVDSSKLQRLTEYVFHLEH 197
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_XENLA (COP9 signalosome complex subunit 8 OS=Xenopus laevis GN=csn8 PE=2 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 8.288e-26 Identity = 64/165 (38.79%), Postives = 97/165 (58.79%), Query Frame = -3 Query: 162 AAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPS--KLQRLTEYV 650 A GIA + ++ L Y ND+N+AR+LWK IPS IK S +E+ W++GQ +W RD+ G+Y +I + WS+ Q ++ A + +R F L+ AY++IS D A F+G+ ++A V +QGW D A+ M+ KK P L P+ +L RLT+YV Sbjct: 29 APGGIASPQVYNQLLAL--YLLHNDLNNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPGIYTSISAYQWSENIQQIMEAVRDATQQRAFGLVSQAYTSISADDFAAFVGLPVEEAVKGVLEQGWQADSATGMVMPKK-PDSAPLSLIPNEQQLARLTDYV 190
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_DANRE (COP9 signalosome complex subunit 8 OS=Danio rerio GN=cops8 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.150e-25 Identity = 56/148 (37.84%), Postives = 86/148 (58.11%), Query Frame = -3 Query: 162 LLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKK-QPLVTEQKLDPSKLQRLTEYV 602 L+ Y ND+N+AR+LWK IP IK + E+ A W +GQ +W RD+ G+Y AI + WS+ ++ A E +R + L+ AY++IS +D A F+G + ++A V GW DP +RM+ +K P + +L RLT+YV Sbjct: 39 LVLYLLHNDMNNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSESILPVMEALRESTRRRAYGLVAQAYTSISAEDFAAFVGYSVEEAVKGVVSHGWQADPNTRMIMPQKPDPPPVSLVPNEQQLARLTDYV 186
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_XENTR (COP9 signalosome complex subunit 8 OS=Xenopus tropicalis GN=csn8 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.017e-25 Identity = 63/165 (38.18%), Postives = 97/165 (58.79%), Query Frame = -3 Query: 162 AAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPS--KLQRLTEYV 650 A GIA + ++ L Y ND+N+AR+LWK IP IK + +E+ W++GQ +W RD+ G+Y +I WS+ Q ++ A + +R F L+ AY++IS D A F+G++ ++A V +QGW D A+RM+ KK P L P+ +L RLT+YV Sbjct: 27 APGGIANPQVYSQLLAL--YLLHNDMNNARYLWKRIPPAIKSAHSELGGIWEVGQKIWQRDFPGIYTSISACQWSEAIQPVMEAVRDATRRRAFGLVSQAYTSISADDFAAFVGLSVEEAVKGVIEQGWQADLATRMVMPKK-PDSAPLSLIPNEQQLARLTDYV 188
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_RAT (COP9 signalosome complex subunit 8 OS=Rattus norvegicus GN=Cops8 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23 Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = -3 Query: 162 YYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYV 593 Y ND+N+AR+LWK IP IK + +E+ W +GQ +W RD+ G+Y I WS+ Q ++ A + +R F L+ AY++I D A F+G+ ++A V +QGW D +RM+ +K PL + P +L RLT+YV Sbjct: 44 YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPAPGALDVSLNRFIPLSEPAPVPPIPNEQQLARLTDYV 204
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_MOUSE (COP9 signalosome complex subunit 8 OS=Mus musculus GN=Cops8 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23 Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = -3 Query: 162 YYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYV 593 Y ND+N+AR+LWK IP IK + +E+ W +GQ +W RD+ G+Y I WS+ Q ++ A + +R F L+ AY++I D A F+G+ ++A V +QGW D +RM+ +K PL + P +L RLT+YV Sbjct: 44 YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPASGTLDVSLNRFIPLSEPAPVPPIPNEQQLARLTDYV 204
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_PONAB (COP9 signalosome complex subunit 8 OS=Pongo abelii GN=COPS8 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.120e-22 Identity = 57/170 (33.53%), Postives = 88/170 (51.76%), Query Frame = -3 Query: 162 PYVIHLLGYYYV-NDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYV 617 P LL Y + ND+N+AR+LWK IP IK + +E+ W +GQ +W RD+ G+Y I WS+ Q ++ A + +R F L+ AY++I D A F+G+ ++A + +QGW D +RM+ +K PL + P +L RLT+YV Sbjct: 35 PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIVADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYV 204
BLAST of CF832766 vs. ExPASy Swiss-Prot
Match: CSN8_HUMAN (COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.120e-22 Identity = 57/170 (33.53%), Postives = 88/170 (51.76%), Query Frame = -3 Query: 162 PYVIHLLGYYYV-NDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----SKLQRLTEYV 617 P LL Y + ND+N+AR+LWK IP IK + +E+ W +GQ +W RD+ G+Y I WS+ Q ++ A + +R F L+ AY++I D A F+G+ ++A + +QGW D +RM+ +K PL + P +L RLT+YV Sbjct: 35 PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYV 204 The following BLAST results are available for this feature:
BLAST of CF832766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832766 ID=CF832766; Name=CF832766; organism=Citrus sinensis; type=EST; length=664bpback to top |