CF832767

Overview
NameCF832767
Unique NameCF832767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832767 vs. ExPASy Swiss-Prot
Match: CSN8_ARATH (COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.390e-80
Identity = 140/197 (71.07%), Postives = 169/197 (85.79%), Query Frame = 1
Query:   46 MDLSPLTDALASKSYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPNKLQRLTKYVFHLEH 636
            MDLSP+ +ALA+KS++KIADICD LML+VA+EGI + D+WPY IHLLGY+YV+D +SARFLWK IP+ IK+ + EVVAAW IGQ LWT DYAGVY+AIRG+DWSQEA+ +VAAFS+LYTKRMFQLLLSAYSTI+  D ALFLGM EDDA  YV + GWT+D AS+M +VKKQ +  EQK+D +KLQRLT+YVFHLEH
Sbjct:    1 MDLSPVKEALAAKSFDKIADICDTLMLQVASEGIEYHDDWPYAIHLLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTKRMFQLLLSAYSTITIHDLALFLGMTEDDATTYVVENGWTVDAASQMASVKKQAVKREQKVDSSKLQRLTEYVFHLEH 197          
BLAST of CF832767 vs. ExPASy Swiss-Prot
Match: CSN8_XENLA (COP9 signalosome complex subunit 8 OS=Xenopus laevis GN=csn8 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29
Identity = 76/199 (38.19%), Postives = 115/199 (57.79%), Query Frame = 1
Query:   46 MDLSPLTDALASKSYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPN--KLQRLTKYVFHLEH 636
            M LS    A  S S++K+ + C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IPS IK S +E+   W++GQ +W RD+ G+Y +I  + WS+  Q ++ A  +   +R F L+  AY++IS  D A F+G+  ++A   V +QGW  D A+ M+  KK P      L PN  +L RLT YV  LE+
Sbjct:    1 MKLSESVMAQNSVSFQKLQEQCEEQELE-APGGIASPQVYNQLLAL--YLLHNDLNNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPGIYTSISAYQWSENIQQIMEAVRDATQQRAFGLVSQAYTSISADDFAAFVGLPVEEAVKGVLEQGWQADSATGMVMPKK-PDSAPLSLIPNEQQLARLTDYVAFLEN 195          
BLAST of CF832767 vs. ExPASy Swiss-Prot
Match: CSN8_XENTR (COP9 signalosome complex subunit 8 OS=Xenopus tropicalis GN=csn8 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 69/186 (37.10%), Postives = 110/186 (59.14%), Query Frame = 1
Query:   85 SYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPN--KLQRLTKYVFHLEH 636
            S++++ + C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IP  IK + +E+   W++GQ +W RD+ G+Y +I    WS+  Q ++ A  +   +R F L+  AY++IS  D A F+G++ ++A   V +QGW  D A+RM+  KK P      L PN  +L RLT YV  LE+
Sbjct:   12 SFQRLQEQCEEQELE-APGGIANPQVYSQLLAL--YLLHNDMNNARYLWKRIPPAIKSAHSELGGIWEVGQKIWQRDFPGIYTSISACQWSEAIQPVMEAVRDATRRRAFGLVSQAYTSISADDFAAFVGLSVEEAVKGVIEQGWQADLATRMVMPKK-PDSAPLSLIPNEQQLARLTDYVAFLEN 193          
BLAST of CF832767 vs. ExPASy Swiss-Prot
Match: CSN8_DANRE (COP9 signalosome complex subunit 8 OS=Danio rerio GN=cops8 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.313e-26
Identity = 61/154 (39.61%), Postives = 90/154 (58.44%), Query Frame = 1
Query:  181 LLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPN--KLQRLTKYVFHLEH 636
            L+ Y   ND+N+AR+LWK IP  IK +  E+ A W +GQ +W RD+ G+Y AI  + WS+    ++ A  E   +R + L+  AY++IS +D A F+G + ++A   V   GW  DP +RM+  +K P      L PN  +L RLT YV  LE+
Sbjct:   39 LVLYLLHNDMNNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSESILPVMEALRESTRRRAYGLVAQAYTSISAEDFAAFVGYSVEEAVKGVVSHGWQADPNTRMIMPQK-PDPPPVSLVPNEQQLARLTDYVAFLEN 191          
BLAST of CF832767 vs. ExPASy Swiss-Prot
Match: CSN8_RAT (COP9 signalosome complex subunit 8 OS=Rattus norvegicus GN=Cops8 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.444e-25
Identity = 67/201 (33.33%), Postives = 104/201 (51.74%), Query Frame = 1
Query:   85 SYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----NKLQRLTKYVFHLEH 636
            S+ K+ D C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   V +QGW  D  +RM+  +K              PL     + P     +L RLT YV  LE+
Sbjct:   12 SFRKLLDQCENQELE-APGGIATPPVYGQLLAL--YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPAPGALDVSLNRFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209          
BLAST of CF832767 vs. ExPASy Swiss-Prot
Match: CSN8_MOUSE (COP9 signalosome complex subunit 8 OS=Mus musculus GN=Cops8 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.444e-25
Identity = 67/201 (33.33%), Postives = 104/201 (51.74%), Query Frame = 1
Query:   85 SYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----NKLQRLTKYVFHLEH 636
            S+ K+ D C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   V +QGW  D  +RM+  +K              PL     + P     +L RLT YV  LE+
Sbjct:   12 SFRKLLDQCENQELE-APGGIATPPVYGQLLAL--YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPASGTLDVSLNRFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209          
BLAST of CF832767 vs. ExPASy Swiss-Prot
Match: CSN8_PONAB (COP9 signalosome complex subunit 8 OS=Pongo abelii GN=COPS8 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.498e-25
Identity = 66/201 (32.84%), Postives = 105/201 (52.24%), Query Frame = 1
Query:   85 SYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----NKLQRLTKYVFHLEH 636
            S++K+ D C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   + +QGW  D  +RM+  +K              PL     + P     +L RLT YV  LE+
Sbjct:   12 SFKKLLDQCENQELE-APGGIATPPVYGQLLAL--YLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIVADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209          
BLAST of CF832767 vs. ExPASy Swiss-Prot
Match: CSN8_HUMAN (COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.498e-25
Identity = 66/201 (32.84%), Postives = 105/201 (52.24%), Query Frame = 1
Query:   85 SYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ-------------PLVTEQKLDP----NKLQRLTKYVFHLEH 636
            S++K+ D C++  L+ A  GIA    +  ++ L  Y   ND+N+AR+LWK IP  IK + +E+   W +GQ +W RD+ G+Y  I    WS+  Q ++ A  +   +R F L+  AY++I   D A F+G+  ++A   + +QGW  D  +RM+  +K              PL     + P     +L RLT YV  LE+
Sbjct:   12 SFKKLLDQCENQELE-APGGIATPPVYGQLLAL--YLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209          
BLAST of CF832767 vs. ExPASy Swiss-Prot
Match: CSN8_DICDI (COP9 signalosome complex subunit 8 OS=Dictyostelium discoideum GN=csn8 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 49/197 (24.87%), Postives = 97/197 (49.24%), Query Frame = 1
Query:   46 MDLSPLTDALASKSYEKIADICDDLMLKVAAEGIAFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSELYTKRMFQLLLSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRML-TVKKQPLVTEQKLDPNKLQRLTKYVFHLE 633
            M  + + + ++SK+++ I D C     ++ ++ I     + Y ++LL Y   ND+ +A+ LWK IP+  K S  ++   + I + +   +    Y ++   +   +    +    E + +R F+L+ +AYS+I+  D + +LG++ +D   +   + W  D AS  L  V  Q   +E      +++ LT YV  LE
Sbjct:    1 MAFTEIANLISSKNFKAILDYCQ--RQEIESKNIDLIKSY-YGVYLLSYLINNDLINAKHLWKRIPNDFKQSNQQLKNIYTIIKSISQTNPTITYTSL-SINIGDDYTPFITTLKENFQQRTFELISNAYSSITVNDCSSYLGISPEDTIKFTTSKCWEHDKASNTLKPVPIQKQSSELPTGNQQIRSLTSYVLFLE 193          
The following BLAST results are available for this feature:
BLAST of CF832767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CSN8_ARATH6.390e-8071.07COP9 signalosome complex subunit 8 OS=Arabidopsis ... [more]
CSN8_XENLA1.351e-2938.19COP9 signalosome complex subunit 8 OS=Xenopus laev... [more]
CSN8_XENTR2.157e-2737.10COP9 signalosome complex subunit 8 OS=Xenopus trop... [more]
CSN8_DANRE5.313e-2639.61COP9 signalosome complex subunit 8 OS=Danio rerio ... [more]
CSN8_RAT3.444e-2533.33COP9 signalosome complex subunit 8 OS=Rattus norve... [more]
CSN8_MOUSE3.444e-2533.33COP9 signalosome complex subunit 8 OS=Mus musculus... [more]
CSN8_PONAB4.498e-2532.84COP9 signalosome complex subunit 8 OS=Pongo abelii... [more]
CSN8_HUMAN4.498e-2532.84COP9 signalosome complex subunit 8 OS=Homo sapiens... [more]
CSN8_DICDI6.737e-1324.87COP9 signalosome complex subunit 8 OS=Dictyosteliu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02G11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832767 ID=CF832767; Name=CF832767; organism=Citrus sinensis; type=EST; length=691bp
TTTTACCAGCCCTTAAAAGAGCAGGGAAGAAGAGTAGGGAGTGCGATGGA
CCTTTCTCCTTTAACAGACGCTTTAGCGTCCAAATCGTATGAAAAAATCG
CTGATATTTGCGACGACCTAATGCTCAAGGTTGCTGCAGAGGGTATTGCG
TTTCAAGACGAATGGCCTTACGTGATTCATCTCCTCGGTTACTATTATGT
CAATGATATTAACAGTGCACGCTTCCTTTGGAAATCAATACCTTCGACGA
TTAAGGATAGCAGGGCAGAAGTGGTTGCAGCTTGGAAAATTGGTCAGCAT
CTTTGGACACGGGATTATGCGGGTGTTTATGATGCCATTCGTGGGTTTGA
TTGGAGTCAAGAAGCACAAGCTCTTGTTGCTGCTTTCTCAGAGCTCTACA
CCAAGAGGATGTTTCAGCTGCTTCTGTCCGCTTATTCGACAATAAGCACC
CAAGACACAGCTCTCTTTCTGGGAATGAATGAGGATGATGCCGCATATTA
TGTACAACAGCAAGGTTGGACTTTGGATCCTGCTTCTCGAATGTTGACCG
TGAAGAAGCAACCTCTTGTGACAGAGCAGAAACTAGATCCCAACAAACTG
CAGCGCTTGACAAAATACGTGTTCCACCTTGAACATTAATTTAACTTCTT
GAACAGCCGAAACTGTCAATTCTCTTGGGAAATCAACTTTT
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