CF832772

Overview
NameCF832772
Unique NameCF832772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832772_ssr384 microsatellite CF832772_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832772_ssr475 microsatellite CF832772_ssr475:475..486. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1026 contig Csv1_Contig1026:1..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.584e-30
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = -2
Query:  141 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 356
            VNNMVLFDQ TYDKLL+EAPK+KLITPSILSDR+RINGSLAR+AIRELMA+GLIRMVSAH+SQQIYTRATNT
Sbjct:   37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = -2
Query:  141 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 356
            VNNMVLFD++TYDKLLSEAPKYKLITPS+LSDR+RI+GSLARKAIR+LMARG IRMVSAHASQQIYTRATNT
Sbjct:   37 VNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30
Identity = 64/72 (88.89%), Postives = 72/72 (100.00%), Query Frame = -2
Query:  141 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 356
            VNNMVLFDQATYDKLL+EAPK+KLITPSILSDR+RINGSLAR+AIRELMA+G+IRMV+AH+SQQIYTRATNT
Sbjct:   37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.034e-29
Identity = 64/71 (90.14%), Postives = 70/71 (98.59%), Query Frame = -2
Query:  144 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATN 356
            VNNMVLFDQATYDKLLSEAPK+KLITPSILSDR+RINGSLAR+AIRELMA+G IRMVSAH+SQQIYTRAT+
Sbjct:   37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.326e-27
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            VNNMVLFDQATYDKL+SEAPK+KLITPSILSDR+RINGSLARKAIR+LM +G IRMVS H+SQQI TRAT
Sbjct:   36 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 105          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_AMACR (40S ribosomal protein S25 OS=Amaranthus cruentus GN=RPS25 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.156e-20
Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = -2
Query:  144 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATN 356
            VNN+VLFD AT+DKLLSEA K K++T + LS+R RINGSLAR+AIREL++RG I+MV  H+S QIYTR+TN
Sbjct:   36 VNNLVLFDNATFDKLLSEAGKQKVVTAATLSERFRINGSLARRAIRELVSRGAIKMVCHHSSLQIYTRSTN 106          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_BRABE (40S ribosomal protein S25 OS=Branchiostoma belcheri GN=RPS25 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.362e-20
Identity = 44/70 (62.86%), Postives = 61/70 (87.14%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            +NN+VLFD+ATYDKL  E P YKLITPS++S+R++I GSLAR A++EL ++G+I++VS H++Q IYTRAT
Sbjct:   40 LNNLVLFDKATYDKLYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKHSAQVIYTRAT 109          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_SHEEP (40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            +NN+VLFD+ATYDKL  E P YKLITP+++S+R++I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_RAT (40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            +NN+VLFD+ATYDKL  E P YKLITP+++S+R++I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_MOUSE (40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            +NN+VLFD+ATYDKL  E P YKLITP+++S+R++I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
The following BLAST results are available for this feature:
BLAST of CF832772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS252_ARATH3.584e-3090.2840S ribosomal protein S25-2 OS=Arabidopsis thalian... [more]
RS25_SOLLC6.113e-3090.2840S ribosomal protein S25 OS=Solanum lycopersicum ... [more]
RS254_ARATH6.113e-3088.8940S ribosomal protein S25-4 OS=Arabidopsis thalian... [more]
RS253_ARATH3.034e-2990.1440S ribosomal protein S25-3 OS=Arabidopsis thalian... [more]
RS251_ARATH6.326e-2785.7140S ribosomal protein S25-1 OS=Arabidopsis thalian... [more]
RS25_AMACR1.156e-2069.0140S ribosomal protein S25 OS=Amaranthus cruentus G... [more]
RS25_BRABE3.362e-2062.8640S ribosomal protein S25 OS=Branchiostoma belcher... [more]
RS25_SHEEP1.669e-1961.4340S ribosomal protein S25 OS=Ovis aries GN=RPS25 P... [more]
RS25_RAT1.669e-1961.4340S ribosomal protein S25 OS=Rattus norvegicus GN=... [more]
RS25_MOUSE1.669e-1961.4340S ribosomal protein S25 OS=Mus musculus GN=Rps25... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02G14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832772 ID=CF832772; Name=CF832772; organism=Citrus sinensis; type=EST; length=534bp
TTTTTTTTGAATGTAAATAAAACTCTAAATTATACTTGTACACTCCCAAA
TAGATTCACAAGAAACAAAAATAATAGCAGTCAAAACACGGCAGAACGAA
ACTACATATAAACTAAGAAGCAAATATCAAAAGAGACTTAGGTGTTGGTT
GCCCTAGTGTAAATCTGCTGGCTTGCGTGAGCAGACACCATCCTGATCAA
ACCTCTAGCCATAAGCTCTCTTATTGCCTTCCTTGCAAGCGATCCATTAA
TCCTTACACGATCGGAGAGAATGGAAGGAGTGATAAGCTTGTATTTAGGA
GCCTCGGACAGAAGCTTGTCATAGGTTGCCTGATCAAACAACACCATGTT
GTTCACTTTCTCCTTTTGCTTTCCCTTGCTCCACTTCTTCTTCTTCTGCT
TGCCGCCTCCGGATTTCGCAGGCTTTGAGGATGGAGGGGGAGCCTTGTCC
TTCTTTGGAGCCATTGGATCTGATCAGACAGACAGAAGTGGAGAGCTCTG
AAACCAAAGTGAGATGTGGGAACAGAGGCGAGCC
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