CF832773

Overview
NameCF832773
Unique NameCF832773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832773_ssr50 microsatellite CF832773_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1026 contig Csv1_Contig1026:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832773 vs. ExPASy Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.342e-37
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 3
Query:  138 QNNKKWSKGKQNEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 395
            Q  KKWSKGKQ EKVNNMVLFD++TYDKLLSEAPKYKLITPS+LSDRLRI+GSLARKAIR+LMARG IRMVSAHASQQIYTRATNT
Sbjct:   23 QKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108          
BLAST of CF832773 vs. ExPASy Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.342e-37
Identity = 76/86 (88.37%), Postives = 82/86 (95.35%), Query Frame = 3
Query:  138 QNNKKWSKGKQNEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 395
            Q  KKWSKGKQ EKVNNMVLFDQ TYDKLL+EAPK+KLITPSILSDR+RINGSLAR+AIRELMA+GLIRMVSAH+SQQIYTRATNT
Sbjct:   23 QKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108          
BLAST of CF832773 vs. ExPASy Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.995e-37
Identity = 75/86 (87.21%), Postives = 83/86 (96.51%), Query Frame = 3
Query:  138 QNNKKWSKGKQNEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATNT 395
            Q  KKWSKGKQ EKVNNMVLFDQATYDKLL+EAPK+KLITPSILSDR+RINGSLAR+AIRELMA+G+IRMV+AH+SQQIYTRATNT
Sbjct:   23 QKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108          
BLAST of CF832773 vs. ExPASy Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.162e-36
Identity = 76/85 (89.41%), Postives = 81/85 (95.29%), Query Frame = 3
Query:  138 QNNKKWSKGKQNEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATN 392
            Q  KKWSKGKQ EKVNNMVLFDQATYDKLLSEAPK+KLITPSILSDRLRINGSLAR+AIRELMA+G IRMVSAH+SQQIYTRAT+
Sbjct:   23 QKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107          
BLAST of CF832773 vs. ExPASy Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.052e-34
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 3
Query:  138 QNNKKWSKGKQNEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 389
            +  KKWSKGKQ EKVNNMVLFDQATYDKL+SEAPK+KLITPSILSDRLRINGSLARKAIR+LM +G IRMVS H+SQQI TRAT
Sbjct:   22 KQKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 105          
BLAST of CF832773 vs. ExPASy Swiss-Prot
Match: RS25_AMACR (40S ribosomal protein S25 OS=Amaranthus cruentus GN=RPS25 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.552e-28
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 3
Query:  138 QNNKKWSKGKQNEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRATN 392
            Q  KKWSKGKQ EKVNN+VLFD AT+DKLLSEA K K++T + LS+R RINGSLAR+AIREL++RG I+MV  H+S QIYTR+TN
Sbjct:   22 QKKKKWSKGKQKEKVNNLVLFDNATFDKLLSEAGKQKVVTAATLSERFRINGSLARRAIRELVSRGAIKMVCHHSSLQIYTRSTN 106          
BLAST of CF832773 vs. ExPASy Swiss-Prot
Match: RS25_BRABE (40S ribosomal protein S25 OS=Branchiostoma belcheri GN=RPS25 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.068e-26
Identity = 53/81 (65.43%), Postives = 70/81 (86.42%), Query Frame = 3
Query:  147 KKWSKGKQNEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 389
            KKWSKGK  +K+NN+VLFD+ATYDKL  E P YKLITPS++S+RL+I GSLAR A++EL ++G+I++VS H++Q IYTRAT
Sbjct:   29 KKWSKGKVRDKLNNLVLFDKATYDKLYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKHSAQVIYTRAT 109          
BLAST of CF832773 vs. ExPASy Swiss-Prot
Match: RS25_SHEEP (40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.508e-25
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = 3
Query:  147 KKWSKGKQNEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 389
            KKWSKGK  +K+NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   33 KKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CF832773 vs. ExPASy Swiss-Prot
Match: RS25_RAT (40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.508e-25
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = 3
Query:  147 KKWSKGKQNEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 389
            KKWSKGK  +K+NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   33 KKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CF832773 vs. ExPASy Swiss-Prot
Match: RS25_MOUSE (40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.508e-25
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = 3
Query:  147 KKWSKGKQNEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 389
            KKWSKGK  +K+NN+VLFD+ATYDKL  E P YKLITP+++S+RL+I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   33 KKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
The following BLAST results are available for this feature:
BLAST of CF832773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RS25_SOLLC2.342e-3789.5340S ribosomal protein S25 OS=Solanum lycopersicum ... [more]
RS252_ARATH2.342e-3788.3740S ribosomal protein S25-2 OS=Arabidopsis thalian... [more]
RS254_ARATH3.995e-3787.2140S ribosomal protein S25-4 OS=Arabidopsis thalian... [more]
RS253_ARATH1.162e-3689.4140S ribosomal protein S25-3 OS=Arabidopsis thalian... [more]
RS251_ARATH7.052e-3484.5240S ribosomal protein S25-1 OS=Arabidopsis thalian... [more]
RS25_AMACR7.552e-2870.5940S ribosomal protein S25 OS=Amaranthus cruentus G... [more]
RS25_BRABE7.068e-2665.4340S ribosomal protein S25 OS=Branchiostoma belcher... [more]
RS25_SHEEP3.508e-2564.2040S ribosomal protein S25 OS=Ovis aries GN=RPS25 P... [more]
RS25_RAT3.508e-2564.2040S ribosomal protein S25 OS=Rattus norvegicus GN=... [more]
RS25_MOUSE3.508e-2564.2040S ribosomal protein S25 OS=Mus musculus GN=Rps25... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02G14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832773 ID=CF832773; Name=CF832773; organism=Citrus sinensis; type=EST; length=541bp
CAGTTTACCTCTCTTCCCACATCTCACTTTCGTTTCAGAGCTCTCCACTT
CTGTCTGTCTGATCAGATCCAATGGCTCCAAAGAAGGACAAGGCTCCCCC
TCCATCCTCAAAGCCTGCGAAATCCGGAGGCGGCAAGCAGAATAACAAGA
AGTGGAGCAAGGGAAAGCAAAATGAGAAAGTGAACAACATGGTGTTGTTT
GATCAGGCAACCTATGACAAGCTTCTGTCCGAGGCTCCTAAATACAAGCT
TATCACTCCTTCCATTCTCTCCGATCGTCTAAGGATTAATGGATCGCTTG
CAAGGAAGGCAATAAGAGAGCTTATGGCTAGAGGTTTGATCAGGATGGTG
TCTGCTCACGCAAGCCAGCAGATTTACACTAGGGCAACCAACACCTAAGT
CTCTTTTGATATTTGCTTCTTAGTTTATATGTAGTTTCGTTCTGCCGTGT
TTTGACTGCTATTATTTTTGTTTCTTGTGAATCTATTTGAGAGTGTACAA
CTATAATTTAGAGTTTTATTTACATTTCTAAAAAAAAAAAA
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