CF832796

Overview
NameCF832796
Unique NameCF832796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832796_ssr181 microsatellite CF832796_ssr181:181..192. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6928 contig Csv1_Contig6928:1514..1934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832796 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:    5 DVALPRGPLWILGDVFLGRYHTVFDYGNLSIGFAEAA 115
            DVA P GPLWILGDVF+G+YHTVFDYGNL +GFAEAA
Sbjct:  437 DVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473
[Close]
BLAST of CF832796 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:    2 FDVALPRGPLWILGDVFLGRYHTVFDYGNLSIGFAEAA 115
            FD+  PRGPLWILGDVF+GRYHTVFD+G L +G AEAA
Sbjct:  476 FDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513
[Close]
BLAST of CF832796 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.325e-11
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 2 
Query:    5 DVALPRGPLWILGDVFLGRYHTVFDYGNLSIGFAEAA 115
            D+  PRGPLWILGDVF+G YHTVFDYG L IGFA+AA
Sbjct:  472 DIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508
The following BLAST results are available for this feature:
BLAST of CF832796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CYPR1_CYNCA1.034e-1283.78Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPR_CUCPE1.143e-1176.32Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR_HORVU3.325e-1178.38Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02H05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832796 ID=CF832796; Name=CF832796; organism=Citrus sinensis; type=EST; length=421bp
TTTCGATGTGGCCCTTCCGCGTGGTCCTCTGTGGATTCTGGGAGATGTTT
TCCTGGGTCGCTATCACACTGTGTTCGACTACGGCAACTTGTCTATTGGA
TTCGCCGAAGCAGCTTGAACAAAATCCACTGGCTTCGTCCATTTCCATAA
CTAGCTTGTTGTAATAATTATATACACATGCATACATACATATATATGTG
TATATATGTGTGTGTTTGTGTCTCTGTGTGTGTATTATAATCCAGTCCAG
GATCGGACTTTATTAGAATCCGGAAAGGTTATTAAACCGTGCGGTTTAGG
TTTAATAGCATAATGCCATTCTACTATTAAACCATGTAGTTTGATCATTT
TCATGGTCATTATACTATTAAACCAAACGGTTTAATAACTTTCCCAAGCA
TTAACAAAAAAAAAAAAAAAA
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