CF832805
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.305e-31 Identity = 63/90 (70.00%), Postives = 77/90 (85.56%), Query Frame = -1 Query: 261 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQMPPDGVDVDMLHDPSRREA 530 MLF+S+FK LVG++V+VELKNDL+I GT+HSVDQYLNIKL + V D +KYPHMLSV+NCFIRGSVVRYVQ+P D VD +L D +R+EA Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.305e-31 Identity = 63/90 (70.00%), Postives = 77/90 (85.56%), Query Frame = -1 Query: 261 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQMPPDGVDVDMLHDPSRREA 530 MLF+S+FK LVG++V+VELKNDL+I GT+HSVDQYLNIKL + V D +KYPHMLSV+NCFIRGSVVRYVQ+P D VD +L D +R+EA Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 6.063e-29 Identity = 59/91 (64.84%), Postives = 77/91 (84.62%), Query Frame = -1 Query: 258 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQMPPDGVDVDMLHDPSRREAR 530 MLFFS++K LVG+E+ VELKNDL+I G + SVDQ+LNIKL++ +V ++DKYP+M+SV+NCFIRGSVVRYV +P + VDV+ L D SR EAR Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae GN=LSM2 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.067e-25 Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = -1 Query: 264 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQMPPDGVDVDMLHDPSRRE 530 MLFFS+FK LV +EV+VELKND+ I+GT+ SVDQ+LN+KL+N D+ KYPH+ SVRN FIRGS VRYV + + VD ++L D +RRE Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQDATRRE 89
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_SCHPO (U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 7.670e-24 Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = -1 Query: 264 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQMPPDGVDVDMLHDPSRRE 530 MLF+S+FK L+ EV VELKND++IRG + SVDQ+LN+KLEN VVD KYPHM +V++ FIRGSVVRYV M VD +L D RR+ Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLADACRRD 89
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_ENTBH (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11 Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = -1 Query: 285 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKY----PHMLSVRNCFIRGSVVRYVQMPPDGVDVDML 530 MLFF YFK + E+IV LKND++I G + +VD +LNIK+EN + +++ + +++ C IRGS ++ V++ +G++ M+ Sbjct: 1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITNIQLCSIRGSAIKSVELKKNGLEEHMV 86 The following BLAST results are available for this feature:
BLAST of CF832805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832805 ID=CF832805; Name=CF832805; organism=Citrus sinensis; type=EST; length=572bpback to top |