CF832805

Overview
NameCF832805
Unique NameCF832805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.305e-31
Identity = 63/90 (70.00%), Postives = 77/90 (85.56%), Query Frame = -1
Query:  261 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQMPPDGVDVDMLHDPSRREA 530
            MLF+S+FK LVG++V+VELKNDL+I GT+HSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQ+P D VD  +L D +R+EA
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90          
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.305e-31
Identity = 63/90 (70.00%), Postives = 77/90 (85.56%), Query Frame = -1
Query:  261 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQMPPDGVDVDMLHDPSRREA 530
            MLF+S+FK LVG++V+VELKNDL+I GT+HSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQ+P D VD  +L D +R+EA
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90          
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.063e-29
Identity = 59/91 (64.84%), Postives = 77/91 (84.62%), Query Frame = -1
Query:  258 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQMPPDGVDVDMLHDPSRREAR 530
            MLFFS++K LVG+E+ VELKNDL+I G + SVDQ+LNIKL++ +V ++DKYP+M+SV+NCFIRGSVVRYV +P + VDV+ L D SR EAR
Sbjct:    1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91          
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae GN=LSM2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.067e-25
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = -1
Query:  264 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQMPPDGVDVDMLHDPSRRE 530
            MLFFS+FK LV +EV+VELKND+ I+GT+ SVDQ+LN+KL+N    D+ KYPH+ SVRN FIRGS VRYV +  + VD ++L D +RRE
Sbjct:    1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQDATRRE 89          
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_SCHPO (U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.670e-24
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = -1
Query:  264 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQMPPDGVDVDMLHDPSRRE 530
            MLF+S+FK L+  EV VELKND++IRG + SVDQ+LN+KLEN  VVD  KYPHM +V++ FIRGSVVRYV M    VD  +L D  RR+
Sbjct:    1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLADACRRD 89          
BLAST of CF832805 vs. ExPASy Swiss-Prot
Match: LSM2_ENTBH (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = -1
Query:  285 MLFFSYFKDLVGREVIVELKNDLAIRGTIHSVDQYLNIKLENTRVVDQDKY----PHMLSVRNCFIRGSVVRYVQMPPDGVDVDML 530
            MLFF YFK  +  E+IV LKND++I G + +VD +LNIK+EN   +  +++      + +++ C IRGS ++ V++  +G++  M+
Sbjct:    1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITNIQLCSIRGSAIKSVELKKNGLEEHMV 86          
The following BLAST results are available for this feature:
BLAST of CF832805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LSM2_MOUSE1.305e-3170.00U6 snRNA-associated Sm-like protein LSm2 OS=Mus mu... [more]
LSM2_HUMAN1.305e-3170.00U6 snRNA-associated Sm-like protein LSm2 OS=Homo s... [more]
LSM2_DICDI6.063e-2964.84Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
LSM2_YEAST4.067e-2560.67U6 snRNA-associated Sm-like protein LSm2 OS=Saccha... [more]
LSM2_SCHPO7.670e-2460.67U6 snRNA-associated Sm-like protein LSm2 OS=Schizo... [more]
LSM2_ENTBH1.149e-1137.21Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02H13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832805 ID=CF832805; Name=CF832805; organism=Citrus sinensis; type=EST; length=572bp
TTTTTTTTATTGTTTACTGCTAATGCTTCCATAATTGAATTCCCACAAAA
TCCCACATAAACAGATTGTTCACACAACCAGCAACACTTTCCCAATTAAT
AGGAGGGACTCCATCCACATTAACACAGGGAACAAATATACAGCCTTTAT
ACTGTCAATTAAGCTTTGGTTAAACAGAAAAACAGTTACATCTAAAAGAA
GAAAAACCAATGTCTACAAAAGTACATTGAAGATTTAAACAACTAACTTC
ACCCACCCCGAGCTTCTCTTCTTGAGGGATCATGAAGCATGTCTACATCA
ACACCATCAGGAGGCATTTGAACATATCTAACCACTGATCCTCTGATGAA
ACAGTTCCTCACTGAAAGCATGTGAGGGTACTTGTCTTGATCAACCACTC
TCGTATTCTCAAGCTTGATATTGAGGTACTGATCAACTGAATGTATAGTC
CCTCTTATTGCCAAATCGTTCTTCAACTCAACAATCACTTCTCTGCCCAC
CAAATCCTTGAAGTATGAAAAGAACAGCATTTTTCCTCGCCGTAATGGAC
AGGGTTCTGCTTCATTGCTTTC
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