CF832806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832806 vs. ExPASy Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.691e-18 Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 1 Query: 25 MLIFSTSRIWWAQK*LLS*RTHLAITGTLHSVDQYLNIKLENTRVVDQNKYPRMLSVRNCFIRGSAVIYVQLPPDGVDVHLLHD 276 ML +S + + ++ + L+I GTLHSVDQYLNIKL + V D KYP MLSV+NCFIRGS V YVQLP D VD LL D Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
BLAST of CF832806 vs. ExPASy Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.691e-18 Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 1 Query: 25 MLIFSTSRIWWAQK*LLS*RTHLAITGTLHSVDQYLNIKLENTRVVDQNKYPRMLSVRNCFIRGSAVIYVQLPPDGVDVHLLHD 276 ML +S + + ++ + L+I GTLHSVDQYLNIKL + V D KYP MLSV+NCFIRGS V YVQLP D VD LL D Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
BLAST of CF832806 vs. ExPASy Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.697e-16 Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1 Query: 25 MLIFSTSRIWWAQK*LLS*RTHLAITGTLHSVDQYLNIKLENTRVVDQNKYPRMLSVRNCFIRGSAVIYVQLPPDGVDVHLLHD 276 ML FS + ++ + + L+ITG L SVDQ+LNIKL++ +V +++KYP M+SV+NCFIRGS V YV LP + VDV L D Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQD 84
BLAST of CF832806 vs. ExPASy Swiss-Prot
Match: LSM2_SCHPO (U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.023e-13 Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1 Query: 82 RTHLAITGTLHSVDQYLNIKLENTRVVDQNKYPRMLSVRNCFIRGSAVIYVQLPPDGVDVHLLHD 276 + ++I G L SVDQ+LN+KLEN VVD +KYP M +V++ FIRGS V YV + VD LL D Sbjct: 20 KNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLAD 84 HSP 2 Score: 27.335 bits (59), Expect = 2.023e-13 Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 3 Query: 33 LFY--FEDLVGTEVTVELKN 86 LFY F+ L+ TEVTVELKN Sbjct: 2 LFYSFFKTLIDTEVTVELKN 21
BLAST of CF832806 vs. ExPASy Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae GN=LSM2 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.738e-13 Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 25 MLIFSTSRIWWAQK*LLS*RTHLAITGTLHSVDQYLNIKLENTRVVDQNKYPRMLSVRNCFIRGSAVIYVQLPPDGVDVHLLHD 276 ML FS + Q+ ++ + + I GTL SVDQ+LN+KL+N D+ KYP + SVRN FIRGS V YV L + VD +LL D Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQD 84 The following BLAST results are available for this feature:
BLAST of CF832806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832806 ID=CF832806; Name=CF832806; organism=Citrus sinensis; type=EST; length=277bpback to top |