CF832806

Overview
NameCF832806
Unique NameCF832806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length277
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832806 vs. ExPASy Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.691e-18
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   25 MLIFSTSRIWWAQK*LLS*RTHLAITGTLHSVDQYLNIKLENTRVVDQNKYPRMLSVRNCFIRGSAVIYVQLPPDGVDVHLLHD 276
            ML +S  +    +  ++  +  L+I GTLHSVDQYLNIKL +  V D  KYP MLSV+NCFIRGS V YVQLP D VD  LL D
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84          
BLAST of CF832806 vs. ExPASy Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.691e-18
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   25 MLIFSTSRIWWAQK*LLS*RTHLAITGTLHSVDQYLNIKLENTRVVDQNKYPRMLSVRNCFIRGSAVIYVQLPPDGVDVHLLHD 276
            ML +S  +    +  ++  +  L+I GTLHSVDQYLNIKL +  V D  KYP MLSV+NCFIRGS V YVQLP D VD  LL D
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84          
BLAST of CF832806 vs. ExPASy Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.697e-16
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   25 MLIFSTSRIWWAQK*LLS*RTHLAITGTLHSVDQYLNIKLENTRVVDQNKYPRMLSVRNCFIRGSAVIYVQLPPDGVDVHLLHD 276
            ML FS  +    ++  +  +  L+ITG L SVDQ+LNIKL++ +V +++KYP M+SV+NCFIRGS V YV LP + VDV  L D
Sbjct:    1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQD 84          
BLAST of CF832806 vs. ExPASy Swiss-Prot
Match: LSM2_SCHPO (U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.023e-13
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   82 RTHLAITGTLHSVDQYLNIKLENTRVVDQNKYPRMLSVRNCFIRGSAVIYVQLPPDGVDVHLLHD 276
            +  ++I G L SVDQ+LN+KLEN  VVD +KYP M +V++ FIRGS V YV +    VD  LL D
Sbjct:   20 KNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLAD 84          

HSP 2 Score: 27.335 bits (59), Expect = 2.023e-13
Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:   33 LFY--FEDLVGTEVTVELKN 86
            LFY  F+ L+ TEVTVELKN
Sbjct:    2 LFYSFFKTLIDTEVTVELKN 21          
BLAST of CF832806 vs. ExPASy Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae GN=LSM2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.738e-13
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   25 MLIFSTSRIWWAQK*LLS*RTHLAITGTLHSVDQYLNIKLENTRVVDQNKYPRMLSVRNCFIRGSAVIYVQLPPDGVDVHLLHD 276
            ML FS  +    Q+ ++  +  + I GTL SVDQ+LN+KL+N    D+ KYP + SVRN FIRGS V YV L  + VD +LL D
Sbjct:    1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQD 84          
The following BLAST results are available for this feature:
BLAST of CF832806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM2_MOUSE3.691e-1855.95U6 snRNA-associated Sm-like protein LSm2 OS=Mus mu... [more]
LSM2_HUMAN3.691e-1855.95U6 snRNA-associated Sm-like protein LSm2 OS=Homo s... [more]
LSM2_DICDI7.697e-1650.00Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
LSM2_SCHPO2.023e-1352.31U6 snRNA-associated Sm-like protein LSm2 OS=Schizo... [more]
LSM2_YEAST2.738e-1347.62U6 snRNA-associated Sm-like protein LSm2 OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02H13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832806 ID=CF832806; Name=CF832806; organism=Citrus sinensis; type=EST; length=277bp
CCCTGTCCATTACGGCGACTAAAAATGCTGATCTTTTCTACTTCGAGGAT
TTGGTGGGCACAGAAGTGACTGTTGAGTTGAAGAACTCATTTGGCAATAA
CAGGGACTCTACATTCAGTTGATCAGTACCTCAATATCAAGCTTGAGAAT
ACGAGAGTGGTTGATCAAAACAAGTACCCTCGCATGCTTTCAGTGAGGAA
CTGTTTCATCAGAGGATCAGCGGTGATATATGTTCAACTGCCTCCTGATG
GTGTTGATGTCCACCTGCTTCATGATG
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