CF832808

Overview
NameCF832808
Unique NameCF832808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.953e-32
Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 2
Query:   44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATRREA 313
            MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFI GSVVRYVQLP D VD  LL DA R+EA
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90          
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.953e-32
Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 2
Query:   44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATRREA 313
            MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFI GSVVRYVQLP D VD  LL DA R+EA
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90          
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.623e-29
Identity = 60/91 (65.93%), Postives = 77/91 (84.62%), Query Frame = 2
Query:   44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATRREAR 316
            MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NCFI GSVVRYV LP + VDV+ L D +R EAR
Sbjct:    1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91          
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae GN=LSM2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.161e-26
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 2
Query:   44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATRRE 310
            MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN FI GS VRYV L  + VD +LL DATRRE
Sbjct:    1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQDATRRE 89          
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_SCHPO (U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.539e-24
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 2
Query:   44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATRRE 310
            MLF+S+FK L+  EVTVELKND++IRG L SVDQ+LN+KLEN  VVD  KYPHM +V++ FI GSVVRYV +    VD  LL DA RR+
Sbjct:    1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLADACRRD 89          
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_ENTBH (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 34/91 (37.36%), Postives = 58/91 (63.74%), Query Frame = 2
Query:   44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY----PHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATR 304
            MLFF YFK  +  E+ V LKND++I G L +VD +LNIK+EN   +  +++      + +++ C I GS ++ V+L  +G++  ++ +ATR
Sbjct:    1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITNIQLCSIRGSAIKSVELKKNGLEEHMV-EATR 90          
The following BLAST results are available for this feature:
BLAST of CF832808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LSM2_MOUSE9.953e-3273.33U6 snRNA-associated Sm-like protein LSm2 OS=Mus mu... [more]
LSM2_HUMAN9.953e-3273.33U6 snRNA-associated Sm-like protein LSm2 OS=Homo s... [more]
LSM2_DICDI4.623e-2965.93Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
LSM2_YEAST8.161e-2665.17U6 snRNA-associated Sm-like protein LSm2 OS=Saccha... [more]
LSM2_SCHPO1.539e-2462.92U6 snRNA-associated Sm-like protein LSm2 OS=Schizo... [more]
LSM2_ENTBH5.678e-1137.36Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02H14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832808 ID=CF832808; Name=CF832808; organism=Citrus sinensis; type=EST; length=575bp
CGAAAGCAAAGCAGCAGAACCCTGTCCATTACGGCGACGAAAAATGCTGT
TCTTTTCATACTTCAAGGATTTGGTGGGCAGAGAAGTGACTGTTGAGTTG
AAGAACGATTTGGCAATAAGAGGGACTCTACATTCAGTTGATCAGTACCT
CAATATCAAGCTTGAGAATACGAGAGTGGTTGATCAAGACAAGTACCCTC
ACATGCTTTCAGTGAGGAACTGTTTCATCACAGGATCAGTGGTTAGATAT
GTTCAACTGCCTCCTGATGGTGTTGATGTCGACCTGCTTCATGATGCCAC
AAGAAGAGAAGCTCGGGGTGGCTGAAGTTAGTTGTTTAAATCTTCAATGT
ACTTTTGTAGACATTGGTTTTTCTTCTTTTAGATGTAACTGTTTTTCTGT
TTAAACAAAGCCTAATTGACAGTATAAAGGCTGTATATCTGTTCCCTGTG
CTAATGTGGATGGAGTCCCTCCTATTAATTGGGAAAGTGTTGCTGGTTGT
GTGAACAATCTGTTTATCTGGGATTTTTCTGAATTCAATTATGGAAGCAT
TATCAGTAAACAAAAAAAAGAAAAA
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