CF832808
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 9.953e-32 Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 2 Query: 44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATRREA 313 MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCFI GSVVRYVQLP D VD LL DA R+EA Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 9.953e-32 Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 2 Query: 44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATRREA 313 MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCFI GSVVRYVQLP D VD LL DA R+EA Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 4.623e-29 Identity = 60/91 (65.93%), Postives = 77/91 (84.62%), Query Frame = 2 Query: 44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATRREAR 316 MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NCFI GSVVRYV LP + VDV+ L D +R EAR Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae GN=LSM2 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 8.161e-26 Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 2 Query: 44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATRRE 310 MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N D+ KYPH+ SVRN FI GS VRYV L + VD +LL DATRRE Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQDATRRE 89
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_SCHPO (U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.539e-24 Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 2 Query: 44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATRRE 310 MLF+S+FK L+ EVTVELKND++IRG L SVDQ+LN+KLEN VVD KYPHM +V++ FI GSVVRYV + VD LL DA RR+ Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLADACRRD 89
BLAST of CF832808 vs. ExPASy Swiss-Prot
Match: LSM2_ENTBH (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11 Identity = 34/91 (37.36%), Postives = 58/91 (63.74%), Query Frame = 2 Query: 44 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY----PHMLSVRNCFITGSVVRYVQLPPDGVDVDLLHDATR 304 MLFF YFK + E+ V LKND++I G L +VD +LNIK+EN + +++ + +++ C I GS ++ V+L +G++ ++ +ATR Sbjct: 1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITNIQLCSIRGSAIKSVELKKNGLEEHMV-EATR 90 The following BLAST results are available for this feature:
BLAST of CF832808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832808 ID=CF832808; Name=CF832808; organism=Citrus sinensis; type=EST; length=575bpback to top |