CF832838

Overview
NameCF832838
Unique NameCF832838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:6..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.857e-49
Identity = 100/152 (65.79%), Postives = 116/152 (76.32%), Query Frame = 3
Query:   81 MSTVRLPTSCLFQAAPRSKKFS--LVKSPASLGSTRSVSKAFGLKCSS-FKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MST    TSC      R+ + S   VKSP+SL     V+K   LK S     SAMAVYKVKL+GP GEE+EFDAPDDAYI+D+AE AG+ELPYSCRAGACSTCAG++ SGSVDQSDGSFLDD Q E+G+VLTCV+YP SDCVI+THKE +LY
Sbjct:    1 MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.413e-48
Identity = 95/155 (61.29%), Postives = 129/155 (83.23%), Query Frame = 3
Query:   81 MSTVRLPTSCLFQAAPRSKKFS-LVKSPA---SLGSTRSVSKAFGLKCS--SFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            M+TVR+ ++ + +A  RS+  + L+ + +   S+GST+ VS++FGLKCS  S  A+  AVYKVKL+GP+G+E+EF+  DD YI+D+AE+AG++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFL+D  +EKG+VLTCVAYP SDCVI+THKE+EL+
Sbjct:    1 MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.155e-40
Identity = 74/97 (76.29%), Postives = 87/97 (89.69%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            AVYKVKLIGP GEENEF+  DD +I+D+AE+AG++LPYSCRAGACSTCAGQ+V G VDQS+GSFL+D   EKGFVLTCVAYP SDCVI+THKE+EL+
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.566e-39
Identity = 80/138 (57.97%), Postives = 106/138 (76.81%), Query Frame = 3
Query:  120 AAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSS-FKASAMAV-YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            AAP +   S        G  R  ++A G + SS F ASA AV +KVKL+GP+G E+EF+APDD YI+++AE AG+ELP+SCRAG+CSTCAG+M +G VDQS+GSFLDD QM +G++LTC++YP +DCVI+THKE +LY
Sbjct:   24 AAPAANTLSFA------GHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDLY 155          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.566e-39
Identity = 73/97 (75.26%), Postives = 86/97 (88.66%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            AVYKVKLIGP+G+ENEFD PDD YI+D+AE+AG++LPYSCRAGACSTCAG++  G VDQSDGSFL+D   EKG+VLTCVAYP SD VI+THKE EL+
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.265e-37
Identity = 81/145 (55.86%), Postives = 103/145 (71.03%), Query Frame = 3
Query:  102 TSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAF-GLKCSSFK---ASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            T  L+  A  +        P S+ +T++ S  F GLK S  +   A AMA YKVKL+ P+G + EF+ P D YI+D AE+ G++LPYSCRAG+CS+CAG++V G VDQSDGSFLDD+Q+E GFVLTCVAYPTSD VI THKE +L
Sbjct:    4 TPALYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQ-EFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.372e-35
Identity = 76/144 (52.78%), Postives = 102/144 (70.83%), Query Frame = 3
Query:  102 TSCLFQAAPRSKKFSLVKSPASLGSTRSVSKA-FGLKCSSFKA--SAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            T+     A  S  F+    P +     +V +A FGLK S+ +   +AMA YKV L+ P G++ E + PDD YI+D+AE+AG++LPYSCRAG+CS+CAG++ SGSV+Q DGSFLDD Q+++G+VLTCVAYPT D  I THKE EL
Sbjct:    4 TTAALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPEGKQ-ELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.056e-35
Identity = 74/129 (57.36%), Postives = 98/129 (75.97%), Query Frame = 3
Query:  153 KSPASLGST--RSVSKAFGLKCSSFKA---SAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            ++P SL S    +    FGLK S+ +    +AMA YKVK I P GE+ E +  +D Y++D+AE+AG++LPYSCRAG+CS+CAG++VSGS+DQSD SFLDD+QM +G+VLTCVAYPTSD VI THKE  +
Sbjct:   20 QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.992e-35
Identity = 69/98 (70.41%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA Y VKLI P+GE N  +  DD YI+D+AE+AG++LPYSCRAGACSTCAG++ +GSVDQSD SFLDD Q+E G+VLTCVAYPTSDC I THKE +LY
Sbjct:    1 MASYTVKLITPDGE-NSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 97          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 8.892e-35
Identity = 69/99 (69.70%), Postives = 81/99 (81.82%), Query Frame = 3
Query:  234 MAVYKVKLIGP-NGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV LI    G     + PDD YI+D+AE+AG++LPYSCRAGACSTCAG+++SG+VDQSD SFLDD Q+E G+VLTCVAYPTSDCVI THKE ELY
Sbjct:    1 MATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEELY 99          
The following BLAST results are available for this feature:
BLAST of CF832838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_MAIZE4.857e-4965.79Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER3_ARATH1.413e-4861.29Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER2_RAPSA3.155e-4076.29Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER6_MAIZE1.566e-3957.97Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER1_RAPSA1.566e-3975.26Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER1_PEA4.265e-3755.86Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER1_MESCR1.372e-3552.78Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER1_ARATH3.056e-3557.36Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER_SYNY43.992e-3570.41Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_MASLA8.892e-3569.70Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832838 ID=CF832838; Name=CF832838; organism=Citrus sinensis; type=EST; length=629bp
GTGGGGCGGCCAATCGTCGGTTTCACTATTACACTGTCACTCGTACAACC
GAACAACCTCCTGGGTTAAAAGGTATAAACATGTCAACTGTGAGACTTCC
CACATCTTGCTTATTCCAGGCTGCTCCCCGAAGCAAAAAATTTTCTTTGG
TCAAGAGCCCGGCTTCCCTGGGTTCGACCAGGAGTGTTTCTAAAGCATTT
GGACTGAAGTGTTCTTCATTCAAAGCATCTGCAATGGCCGTTTACAAAGT
GAAACTGATTGGACCAAACGGAGAGGAGAATGAGTTTGATGCCCCCGATG
ATGCTTACATCATAGACTCTGCCGAAGATGCCGGAATGGAGCTACCCTAC
TCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGG
CTCCGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGA
AAGGTTTCGTGCTTACATGCGTTGCATATCCTACATCAGATTGTGTGATT
TACACACACAAGGAATCTGAACTTTACTGAATAATAATGTTACGAGCTTG
GCATTTGCTTTCTGGGATCCGCATTTGTGCTAGAACGGTGGAAGAAACTG
TTGATATTTGCTTATGTTCATCTTTAGCA
back to top