CF832856

Overview
NameCF832856
Unique NameCF832856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1097 contig Csv1_Contig1097:453..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: YRDA_SHIFL (Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = -3
Query:  462 PTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNY 728
            P TIG++VTVGH  +LHGCT+ +   VGMG+ LLDG +VE   M+ AGSLV QN R+ SG ++ G+P K +R L+DEE A +  SA NY
Sbjct:   80 PLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 168          
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: YRDA_ECOLI (Protein yrdA OS=Escherichia coli (strain K12) GN=yrdA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = -3
Query:  462 PTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNY 728
            P TIG++VTVGH  +LHGCT+ +   VGMG+ LLDG +VE   M+ AGSLV QN R+ SG ++ G+P K +R L+DEE A +  SA NY
Sbjct:   80 PLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 168          
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: Y2881_DICDI (Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 48/128 (37.50%), Postives = 79/128 (61.72%), Query Frame = -3
Query:  345 PTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSML 728
            PT IGD V +G  +++H  T+  E+F+G G+TL DG VVE++G + AGSL+     I SGE WGG+PAKF+R++T ++ + + +      NL++ H  + +KS  E+  +  L +K+ +     D +L
Sbjct:  117 PTQIGDKVYIGPGSIVHAATILGESFIGTGSTLCDGSVVEKNGFLEAGSLLTAGKTIKSGEYWGGSPAKFIRQVTKDDESQLEKIIEQNINLSEQHEKQTSKSAKELNND--LLQKYVKNRTRSDHIL 242          
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: Y304_METJA (Uncharacterized protein MJ0304 OS=Methanocaldococcus jannaschii GN=MJ0304 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = -3
Query:  447 PTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 728
            PT IGD V++GH AV+HGC +ED   VGM AT+L+G  +  + ++ A +LV QN  IP   +  G P + +R+LT+EEI  I ++A  Y  L++
Sbjct:   60 PTIIGDYVSIGHGAVIHGCRIEDNVLVGMNATILNGAKIGENCIIGANALVTQNKEIPPNSLVLGVPGRVVRELTEEEIKSIKENALRYVKLSE 153          
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: UMP7_ARATH (Uncharacterized protein At5g63510, mitochondrial OS=Arabidopsis thaliana GN=At5g63510 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.408e-16
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = -3
Query:  432 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 725
            T I   VTVG  ++L  CT+E E  +G  + L++G +VE   ++ AGS+V    RIPSGE+WGGNPA+F+R LT+EE   I + A   ++L+  + +E
Sbjct:  133 TIIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSE 230          
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: UMP8_ARATH (Uncharacterized protein At3g48680, mitochondrial OS=Arabidopsis thaliana GN=At3g48680 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 41/98 (41.84%), Postives = 63/98 (64.29%), Query Frame = -3
Query:  432 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 725
            T I   VTVG  ++L  CT+E E  +G  + L++G +VE   ++ AGS++    RIPSGE+WGGNPA+F+R LT+EE   I + A   ++L+  + +E
Sbjct:  137 TLIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVLPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSE 234          
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: Y3753_PSEAE (Uncharacterized protein PA3753 OS=Pseudomonas aeruginosa GN=PA3753 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 35/99 (35.35%), Postives = 64/99 (64.65%), Query Frame = -3
Query:  432 PTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 728
            P T+G  VTVGH+A+LHGC+V D + VG+ A +L+G  + ++ ++ A +L+ +   IP G +  G+P K +R+L++ +   +  SA +Y + A+ +A +
Sbjct:   70 PLTLGKGVTVGHNAMLHGCSVGDYSLVGINAVILNGAKIGKYCIIGANALIPEGKEIPDGSLVMGSPGKVVRELSEPQKKMLEASAAHYVHNARRYARD 168          
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: PAAY_ECOLI (Phenylacetic acid degradation protein paaY OS=Escherichia coli (strain K12) GN=paaY PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.502e-13
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = -3
Query:  381 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA-----QVHAAENAKSFD----EIEFEKVLRKK 725
            T +G++  +GHSA+LHGC +   A VGM A ++DG V+  + +V A + V+    +P+  +  G+PAK +R+L+++E+A+  Q    Y  L       +H  E  +  +     + F++ LR K
Sbjct:   72 TVVGEDGHIGHSAILHGCIIRRNALVGMNAVVMDGAVIGENSIVGASAFVKAKAEMPANYLIVGSPAKAIRELSEQELAWKKQGTHEYQVLVTRCKQTLHQVEPLREIEPGRKRLVFDENLRPK 195          
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_SALTY (Carnitine operon protein caiE OS=Salmonella typhimurium GN=caiE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = -3
Query:  450 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 725
            T + +N  +GH A+LHGC V  +A VGM + ++DG V+    +VAA S V+   +  + ++  G+PA+ LR++TD+E+ +   +   Y +LA
Sbjct:   72 TIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKHLNTKEYQDLA 163          
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_SALTI (Carnitine operon protein caiE OS=Salmonella typhi GN=caiE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = -3
Query:  450 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 725
            T + +N  +GH A+LHGC V  +A VGM + ++DG V+    +VAA S V+   +  + ++  G+PA+ LR++TD+E+ +   +   Y +LA
Sbjct:   72 TIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELYWKRLNTKEYQDLA 163          
The following BLAST results are available for this feature:
BLAST of CF832856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
YRDA_SHIFL2.164e-2053.93Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=... [more]
YRDA_ECOLI2.164e-2053.93Protein yrdA OS=Escherichia coli (strain K12) GN=y... [more]
Y2881_DICDI6.296e-2037.50Uncharacterized protein DDB_G0288155 OS=Dictyostel... [more]
Y304_METJA2.924e-1743.62Uncharacterized protein MJ0304 OS=Methanocaldococc... [more]
UMP7_ARATH9.408e-1642.86Uncharacterized protein At5g63510, mitochondrial O... [more]
UMP8_ARATH2.096e-1541.84Uncharacterized protein At3g48680, mitochondrial O... [more]
Y3753_PSEAE3.952e-1435.35Uncharacterized protein PA3753 OS=Pseudomonas aeru... [more]
PAAY_ECOLI1.502e-1331.45Phenylacetic acid degradation protein paaY OS=Esch... [more]
CAIE_SALTY1.076e-1135.87Carnitine operon protein caiE OS=Salmonella typhim... [more]
CAIE_SALTI1.076e-1135.87Carnitine operon protein caiE OS=Salmonella typhi ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832856 ID=CF832856; Name=CF832856; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTTTTTCGATAAAAACCAACATACATGATGCTGGTGGCATTAGTTT
CGGGCAGAGAAGAAAATAGAGTTCTTAAACAGTCACAAGAAGGGCGGAGC
TGAAAGCTAAAAAGGAGCCACTAAAAAGGAGCCACGAATCTATTCTACAT
GTCTGGTATTATTGGGAACAAGGATGACCCCCTTCTTCATGTATTTGCAC
GTAACAACAAATATTCCTTGATTTCAAATCTCCAGATTCAAACTCAGAAA
AAACTACCTAGGAAAAATATTATTTCTGCAACGACTTTGGATCTTTGATG
CTATCAGGAACAATAATTTCTTGAGGAGTTTCACGAACAACACCGAGCAT
TGAGTCGTATTCCTCATCCCGACGTGCAAACTTCTTGCGAAGAACTTTCT
CAAATTCAATCTCATCGAAGGACTTCGCATTCTCAGCTGCATGAACTTGT
GCCAAGTTGGAATAATTGGTGGCTGACTGGGAAATAAAGGCTATTTCTTC
ATCAGTGAGCTTTCTCAGGAACTTTGCTGGATTGCCTCCCCATACCTCTC
CAGAAGGGATCCTGGTATTCTGCCTCACAAGAGATCCAGCAGCAACCATG
CCATGTCTCTCAACAACAACACCATCAAGTAGTGTTGCTCCCATGCCAAC
AAAGGCCTCGTCCTCAACAGTACAGCCATGTAAAACAGCACTATGGCCTA
CAGTAACATTGTCCCCAATAGTAGTCGGTAGCACCT
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