CF832859

Overview
NameCF832859
Unique NameCF832859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1040..1420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPE1_SOYBN (Arginine decarboxylase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.540e-54
Identity = 100/126 (79.37%), Postives = 108/126 (85.71%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTQAMPGPSCG 379
            YHV LSIFTS+PD W I  +FPI+PIH LDE+P VRG+LSDLTCDSDGKIDKFI G +SLPLHEM GG       YYLGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGPHSFAVT+A+PGPSCG
Sbjct:  497 YHVNLSIFTSVPDAWGIEQVFPIIPIHRLDEKPSVRGILSDLTCDSDGKIDKFINGESSLPLHEMEGG-----RTYYLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGPSCG 617          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPE1_PEA (Arginine decarboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.782e-52
Identity = 97/125 (77.60%), Postives = 107/125 (85.60%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTQAMPGPSC 376
            YHV LS+FTS+PD+W I  LFPIVPIH LDE+P  RG+LSDLTCDSDGKIDKFIGG +SLPLHEM G G    G YYLGMFLGG+YEEALGG+HNLFGGPSVVRVLQSDGPH FAVT+A+ G SC
Sbjct:  509 YHVNLSVFTSVPDFWGINQLFPIVPIHRLDEKPTARGILSDLTCDSDGKIDKFIGGESSLPLHEMEGHG----GGYYLGMFLGGSYEEALGGLHNLFGGPSVVRVLQSDGPHGFAVTRAVAGSSC 629          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPE1_ARATH (Arginine decarboxylase 1 OS=Arabidopsis thaliana GN=SPE1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.040e-52
Identity = 98/124 (79.03%), Postives = 106/124 (85.48%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTQAMPGPS 373
            YHV LS+FTSIPD+W I  LFPIVPIH LD+RP  RG+LSDLTCDSDGKI+KFIGG +SLPLHEM   GC   G YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPH FAVT+A+ G S
Sbjct:  481 YHVNLSVFTSIPDFWGIDQLFPIVPIHKLDQRPAARGILSDLTCDSDGKINKFIGGESSLPLHEMDNNGC-SGGRYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHGFAVTRAVMGQS 603          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPE2_ARATH (Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.733e-51
Identity = 96/124 (77.42%), Postives = 107/124 (86.29%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTQAMPGPS 373
            Y++ LS+FTSIPD W I  LFPIVPIH LD+RPG RG+LSDLTCDSDGKI+KFIGG +SLPLHE+   G G  G Y+LGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGPHSFAVT+A+PG S
Sbjct:  494 YNINLSVFTSIPDLWGIDQLFPIVPIHKLDQRPGARGILSDLTCDSDGKINKFIGGESSLPLHELDKNGSG--GRYFLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGQS 615          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPE1_DIACA (Arginine decarboxylase OS=Dianthus caryophyllus GN=ADC PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.146e-49
Identity = 93/124 (75.00%), Postives = 105/124 (84.68%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTQAMPGPS 373
            Y+V LS+FTSIPD+W I  LFPI+PIH LD++P  RG+LSDLTCDSDGKIDKFIG  +SLPLHE+ GG       YYLGMFLGGAYEEALGGVHNLFGGPSVVRV QSDGP S+AVT+A+PGPS
Sbjct:  506 YNVNLSVFTSIPDFWGIGQLFPIMPIHRLDQQPKARGILSDLTCDSDGKIDKFIGDESSLPLHELSGG-----EGYYLGMFLGGAYEEALGGVHNLFGGPSVVRVQQSDGPQSYAVTRAVPGPS 624          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPE1_SOLLC (Arginine decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.195e-48
Identity = 89/115 (77.39%), Postives = 101/115 (87.83%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFA 346
            YHV LS+FTSIPD+W  + LFPIVPIH LDE+P +RG+LSDLTCDSDGK+DKFIGG +SLPLHE+   G G+ G YYLGMFLGGAYEEALGG+HNLFGGPSVVRV+QSD PHSFA
Sbjct:  391 YHVNLSVFTSIPDFWGFSQLFPIVPIHRLDEKPTMRGILSDLTCDSDGKVDKFIGGESSLPLHEI---GSGDGGRYYLGMFLGGAYEEALGGLHNLFGGPSVVRVMQSDSPHSFA 502          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPE1_BRAJU (Arginine decarboxylase OS=Brassica juncea GN=ADC1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.478e-48
Identity = 93/124 (75.00%), Postives = 102/124 (82.26%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTQAMPGPS 373
            Y+V LS+F SIPD+W I  LFPIVPIH LD+RP  RG+LSDLTCDSDGKI+KFIGG +SLPLHE+   G      YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQ DGPH FAVT+AM G S
Sbjct:  487 YNVNLSVFHSIPDFWGIDQLFPIVPIHRLDQRPVARGILSDLTCDSDGKINKFIGGESSLPLHELDNNG------YYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQKDGPHGFAVTRAMMGQS 604          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPE1_ORYSJ (Arginine decarboxylase OS=Oryza sativa subsp. japonica GN=ADC1 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.322e-47
Identity = 92/125 (73.60%), Postives = 102/125 (81.60%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTQAMPGPSC 376
            YH+ LS+FTS+PD WAI  +FPI+PI  L ERP V GVLSDLTCDSDGK+D FIGG  SLPLHE+     G RG YYLGMFLGGAY+EALGG+HNLFGGPSVVRV QSDGPH FAVT+A  GPSC
Sbjct:  497 YHINLSVFTSLPDMWAIGQMFPIIPIQRLGERPAVDGVLSDLTCDSDGKVDHFIGGRHSLPLHELPVH--GTRG-YYLGMFLGGAYQEALGGLHNLFGGPSVVRVSQSDGPHCFAVTRAAAGPSC 618          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPE1_AVESA (Arginine decarboxylase OS=Avena sativa GN=SPE1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.820e-28
Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTQAMPG 367
            YH+ LS+F+ +PDYW I  LFP++P+  LDE+P  +  L D+TCDSDGK+DKFI    ++PLH +      + G YY+ + L GAY+EAL   HNLFGGPS+VRV+ +    +F V  A+ G
Sbjct:  432 YHMNLSVFSLMPDYWGIQHLFPMMPVSRLDEKPTHKATLVDVTCDSDGKVDKFIRDTETMPLHPL----DPKLGGYYVAVLLTGAYQEALSNKHNLFGGPSLVRVVGTGNGGAFNVEAALLG 549          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_THEEB (Biosynthetic arginine decarboxylase OS=Thermosynechococcus elongatus (strain BP-1) GN=speA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.540e-27
Identity = 58/105 (55.24%), Postives = 74/105 (70.48%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            Y++ LS+F S+PD WAI  LFPI+PIH LDE P  RG+L+DLTCDSDGKID+FI       + E+     GE  PYYLG+FL GAY+E +G +HNLFG  + V +
Sbjct:  462 YYINLSVFQSVPDSWAIDQLFPIMPIHRLDEEPTERGILADLTCDSDGKIDQFIDLRDVKSVLELHPFRPGE--PYYLGLFLNGAYQEIMGNLHNLFGDTNAVHI 564          
The following BLAST results are available for this feature:
BLAST of CF832859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SPE1_SOYBN5.540e-5479.37Arginine decarboxylase OS=Glycine max PE=2 SV=1[more]
SPE1_PEA1.782e-5277.60Arginine decarboxylase OS=Pisum sativum PE=2 SV=1[more]
SPE1_ARATH3.040e-5279.03Arginine decarboxylase 1 OS=Arabidopsis thaliana G... [more]
SPE2_ARATH5.733e-5177.42Arginine decarboxylase 2 OS=Arabidopsis thaliana G... [more]
SPE1_DIACA3.146e-4975.00Arginine decarboxylase OS=Dianthus caryophyllus GN... [more]
SPE1_SOLLC1.195e-4877.39Arginine decarboxylase OS=Solanum lycopersicum PE=... [more]
SPE1_BRAJU3.478e-4875.00Arginine decarboxylase OS=Brassica juncea GN=ADC1 ... [more]
SPE1_ORYSJ1.322e-4773.60Arginine decarboxylase OS=Oryza sativa subsp. japo... [more]
SPE1_AVESA6.820e-2848.36Arginine decarboxylase OS=Avena sativa GN=SPE1 PE=... [more]
SPEA_THEEB7.540e-2755.24Biosynthetic arginine decarboxylase OS=Thermosynec... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832859 ID=CF832859; Name=CF832859; organism=Citrus sinensis; type=EST; length=381bp
TTATCATGTGACTCTATCTATTTTCACTTCAATTCCGGATTATTGGGCCA
TTGCGTAGTTGTTTCCTATTGTTCCAATTCATCATTTGGATGAGAGGCCT
GGAGTGAGGGGGGTTTTATCGGATTTGACTTGTGATAGTGATGGTAAGAT
TGATAAGTTCATTGGTGGTGGTACGAGCTTGCCGTTACATGAAATGGTTG
GTGGTGGTTGTGGTGAGCGTGGGCCTTATTATTTGGGGATGTTCTTGGGC
GGGGCTTATGAGGAGGCCCTCGGTGGAGTCCACAACTTGTTTGGTGGTCC
AAGCGTGGTACGCGTCTTGCAGAGTGATGGTCCGCACAGCTTTGCTGTGA
CTCAGGCCATGCCTGGGCCGTCTTGTGGGGA
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