CF832876

Overview
NameCF832876
Unique NameCF832876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:144..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 3.543e-70
Identity = 130/177 (73.45%), Postives = 148/177 (83.62%), Query Frame = 3
Query:    3 TSEELKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            TSEE+KKIV+ LN+AE                     K++LR+DFHVAAQNCWV+KGGAFTGEVSAEML NL IPWVILGHSERRALLNESN+FVGDK AYALSQGLKVIACVGETLEQRE+GST++VVA QTKAIAEK+S+W N+V+AYEPVWAIGTGK A+PA+AQEVH EL+KW
Sbjct:   16 TSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKW 192          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 3.316e-68
Identity = 128/177 (72.32%), Postives = 146/177 (82.49%), Query Frame = 3
Query:    3 TSEELKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            T+EE+KKI++TLN A+                     K+ LR DFHVAAQNCWV+KGGAFTGEVSAEML NLSIPWVILGHSERRALL ESN+FVGDKVAYALSQGLKVIACVGETLE+RESGST+ VVA QTKAIA+++ +W NVV+AYEPVWAIGTGK A+PA+AQEVHAEL+KW
Sbjct:   16 TAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKW 192          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 5.656e-68
Identity = 126/177 (71.19%), Postives = 147/177 (83.05%), Query Frame = 3
Query:    3 TSEELKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            T+EE+KKIV+TLN+A+                     KS LRSDF VAAQNCWV+KGGAFTGEVSAEML NL IPWVILGHSERRA+LNES++FVGDKVAYAL+QGLKVIACVGETLE+RE+GST+ VVA QTKAIA++++NW NVV+AYEPVWAIGTGK A+PA+AQEVH EL+KW
Sbjct:   16 TAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKW 192          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 252.292 bits (643), Expect = 1.067e-66
Identity = 125/177 (70.62%), Postives = 142/177 (80.23%), Query Frame = 3
Query:    3 TSEELKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            T+++++KIV TLN+ +                     KS LR +FHVAAQNCWV+KGGAFTGEVSAEML NL +PWVILGHSERRALL ESN+FVGDKVAYALSQGLKVIACVGETLEQRE+GST+ VVA QTKAIAEKI +W NVV+AYEPVWAIGTGK ATPA+AQEVHA L+ W
Sbjct:   16 TTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDW 192          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 239.58 bits (610), Expect = 7.155e-63
Identity = 121/177 (68.36%), Postives = 138/177 (77.97%), Query Frame = 3
Query:    3 TSEELKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            T++++ KIV  LN+ +                     KS LR +  VAAQNCWV+KGGAFTGEVSAEML NLSIPWVILGHSERR+LL ESN+FVGDKVAYALSQGLKVIACVGETLEQRESGST+ VVA QTKAI+E+I +W NVV+AYEPVWAIGTGK ATP +AQEVH  L+KW
Sbjct:   16 TTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKW 192          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 4.638e-62
Identity = 114/131 (87.02%), Postives = 126/131 (96.18%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            VAAQNCWV+KGGAFTGEVSAEMLANL +PWVILGHSERRALLNE+N+FVGDKVAYALSQGLKVIACVGETLEQRE+G+T+ VVA QTKAIA+KIS+WDNVVLAYEPVWAIGTGK A+PA+AQEVHA L+KW
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKW 133          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 1.762e-61
Identity = 118/177 (66.67%), Postives = 137/177 (77.40%), Query Frame = 3
Query:    3 TSEELKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            T E+++ IV TLN  +                     K+ LR +  VAAQNCWV+KGGAFTGEVSAEMLANL +PWVILGHSERR+LL ES++FVG+KVAYAL+QGLKVIACVGETLEQRE+GST+ VVAEQTKAIA KI +W N V+AYEPVWAIGTGK ATPA+AQEVHA L+ W
Sbjct:   16 TVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDW 192          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 5.127e-61
Identity = 117/177 (66.10%), Postives = 137/177 (77.40%), Query Frame = 3
Query:    3 TSEELKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            T  +++ IV+TLN  +                     K  LR +  VAAQNCWV+KGGAFTGEVSAEML NL IPWVILGHSERR+LL ES++FVG+KVAYAL+QGLKVIACVGETLEQRE+GST+ VVAEQTKAIA+KI +W NVV+AYEPVWAIGTGK A+PA+AQEVHA L+ W
Sbjct:   16 TVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDW 192          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.547e-49
Identity = 100/178 (56.18%), Postives = 119/178 (66.85%), Query Frame = 3
Query:    3 TSEELKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            T E + KIV TLN+                        + L+ +  VAAQNCWV+KGGAFTGEVSA+MLANL I WVILGHSERR LL ESN+FVG K AYA S+GL VIAC+GE LE+RE+G T  V  +Q K+ A      WDNVV+AYEPVWAIGTGK A+P +AQEVH  ++ W
Sbjct:   16 TQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDW 193          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 5.504e-47
Identity = 89/140 (63.57%), Postives = 112/140 (80.00%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES++ + DKVA+AL++GLKVIAC+GETL++RE+G T AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK A+P +AQEVHA L+KW
Sbjct:   51 RSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKW 190          
The following BLAST results are available for this feature:
BLAST of CF832876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_COPJA3.543e-7073.45Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_PETHY3.316e-6872.32Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ARATH5.656e-6871.19Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_MAIZE1.067e-6670.62Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ7.155e-6368.36Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_LACSA4.638e-6287.02Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_HORVU1.762e-6166.67Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_SECCE5.127e-6166.10Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_STELP1.547e-4956.18Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_CULTA5.504e-4763.57Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832876 ID=CF832876; Name=CF832876; organism=Citrus sinensis; type=EST; length=535bp
GGACATCTGAGGAATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGCCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGATGCAACCCCTGCTCGG
GCTCAGGAAGTCCATGCTGAACTGAAGAAATGGCT
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