CF832883

Overview
NameCF832883
Unique NameCF832883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832883_ssr70 microsatellite CF832883_ssr70:70..79. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832883_ssr626 microsatellite CF832883_ssr626:626..637. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10201 contig Csv1_Contig10201:261..1062. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.367e-34
Identity = 77/142 (54.23%), Postives = 95/142 (66.90%), Query Frame = -2
Query:  161 EDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDF----TRMXXXXXXXXXXXXXXXKAFEMFELEK-KGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 571
            ++EL+QVF HFD DGDGKISA ELR YFGS+GEY+S+E A+ AI            F+DF    TR                 AFEMFE+EK  GCITPKGLQ+ML +LG+S++Y EC AMI+ +D DGNG+LD+HEF QMM
Sbjct:   62 KEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFEDFVGLMTRRDLYGDGEVDGDGELKTAFEMFEVEKGSGCITPKGLQKMLVKLGESRTYGECEAMIKFYDIDGNGILDFHEFRQMM 203          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML19_ORYSJ (Putative calcium-binding protein CML19 OS=Oryza sativa subsp. japonica GN=CML19 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = -2
Query:  161 ELKQVFRHFDGDGDGKISALELRAYF-GSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXK--AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 565
            E ++VF  FD D DGKISA ELR     ++GE MS EEA A +             ++FT++                  AF M+E+E +G ITP  L+RML++LG  +  +EC  MI  FD DG+GV+ + EF  MM
Sbjct:    7 EFRRVFSAFDRDADGKISAAELRLCMKAALGEDMSAEEAEALVSSADTDDDGLLDEEEFTKLAVQLEMGDEEERCRGLMEAFRMYEMEGEGRITPASLKRMLSKLGSHQGIEECQTMICRFDLDGDGVISFEEFKIMM 144          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML23_ORYSJ (Putative calcium-binding protein CML23 OS=Oryza sativa subsp. japonica GN=CML23 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.770e-17
Identity = 56/145 (38.62%), Postives = 73/145 (50.34%), Query Frame = -2
Query:  161 DELKQVFRHFDGDGDGKISALELRAYF-GSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXK--------AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 568
            DE ++VF  FD DGDGKISA ELR     S+GE M  EE +A +             ++F R+                        AF M+E+E +GCITP  L+ ML++LG      EC AMI  FD +G+GVL + EF  MM
Sbjct:    5 DEFRRVFGSFDQDGDGKISATELRLCVKASLGEDMPDEEVQALMALADTDGDGLLDEEEFVRLVTEMEADGDEEEDDDDETCRCLREAFAMYEMEGRGCITPLSLKLMLSKLGTHLDVAECQAMICRFDMNGDGVLTFDEFKTMM 149          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML39_ARATH (Calcium-binding protein CML39 OS=Arabidopsis thaliana GN=CML39 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.842e-17
Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = -2
Query:  161 KEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXK--AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 574
            K  +L+ VF + D + DG+ISA EL+  F ++GE MS EEA AA+              +F  +                  AF M+  + + CITP  L+ ML +LG+S++ D+C  MIQ FD + +GVL + EF+ MM
Sbjct:   19 KNRDLEAVFAYMDANRDGRISAEELKKSFKTLGEQMSDEEAEAAVKLSDIDGDGMLDINEFALLIKGNDEFTEEEKKRKIMEAFRMYIADGEDCITPGSLKMMLMKLGESRTTDDCKVMIQAFDLNADGVLSFDEFALMM 158          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML38_ARATH (Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.679e-16
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = -2
Query:  161 KEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 574
            K  EL+ VF + D + DG+IS  EL+  F ++GE +S EEA AA+            F++F+++                AF ++  E + CITP+ L+ ML +LG+S++ D+C  MI  FD + +GVL + EF+ MM
Sbjct:   40 KNRELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDGMLDFEEFSQLIKVDDEEEKKMELKG-AFRLYIAEGEDCITPRSLKMMLKKLGESRTTDDCRVMISAFDLNADGVLSFDEFALMM 176          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML31_ORYSJ (Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica GN=CML31 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.679e-16
Identity = 54/139 (38.85%), Postives = 71/139 (51.08%), Query Frame = -2
Query:  161 ELKQVFRHFDGDGDGKISALELRAYFGS-IGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXK---AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 565
            E   +F  FD DGDG+ISA ELR    + +GE +S EEA   +              +F R+                   AF M+E+E +GCITP  L+RML RLG  +  D+C AMI  FD +G+GVL + EF  MM
Sbjct:   11 ESSALFATFDHDGDGRISAAELRLCMKTTLGEEVSDEEAGQLVASVDADGDGLLCEAEFVRLVQAAEVEEEDERRGTGLREAFGMYEMEGEGCITPTSLRRMLRRLGSDQDIDDCRAMICRFDLNGDGVLSFDEFKIMM 149          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML26_ARATH (Probable calcium-binding protein CML26 OS=Arabidopsis thaliana GN=CML26 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.018e-13
Identity = 45/136 (33.09%), Postives = 70/136 (51.47%), Query Frame = -2
Query:  158 ELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMMA 565
            ELK+VF  FD +GDGKIS  EL   F S+G   + EE    +             ++F  +                AF++++  K G I+   + ++LNRLG + S ++CV MI   DTDG+G +++ EF +MM+
Sbjct:   20 ELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEEFATICRSSSSAVEIRE----AFDLYDQNKNGLISSSEIHKVLNRLGMTCSVEDCVRMIGHVDTDGDGNVNFEEFQKMMS 151          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.018e-13
Identity = 46/135 (34.07%), Postives = 66/135 (48.89%), Query Frame = -2
Query:  161 ELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 565
            EL+ VF+ FD +GDGKIS+ EL A   S+G  +  EE   AI            F++F  +                AF +++++  G I+ + L  +L  LGD  S  EC  MI   D DG+G +D+ EF  MM
Sbjct:   37 ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKMIGGVDKDGDGTIDFEEFKIMM 171          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML27_ARATH (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.330e-13
Identity = 44/136 (32.35%), Postives = 69/136 (50.74%), Query Frame = -2
Query:  161 DELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 568
            +ELK+VF  FD +GDGKIS LEL   F ++G   +  E    +              +F+ +                AF++++ +K G I+   L ++LNRLG S S ++C  MI   D DG+G +++ EF +MM
Sbjct:   22 EELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFSTLCRSSSSAAEIRD----AFDLYDQDKNGLISASELHQVLNRLGMSCSVEDCTRMIGPVDADGDGNVNFEEFQKMM 153          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML15_ORYSJ (Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica GN=CML15 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.737e-13
Identity = 45/148 (30.41%), Postives = 74/148 (50.00%), Query Frame = -2
Query:  158 ACEPKKIPKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXK-AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMMA 598
            A +P+    EDE ++VFR FD +GDG+IS  EL A F S+G  ++ +E    +              +F  +               + AF +F+ +  G ITP  L R+L  +G++ +  +C  MI   D +G+G++++ EF  MMA
Sbjct:   44 AAKPRPPAAEDETERVFRKFDANGDGRISRAELAALFRSVGHAVTDDEVARMMQEADSDGDGYISLGEFAAISAPPPGDAAAAEEDLRHAFGVFDADGNGVITPAELARVLRGIGEAATVAQCRRMIDGVDRNGDGLINFEEFKLMMA 191          
The following BLAST results are available for this feature:
BLAST of CF832883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CML41_ARATH1.367e-3454.23Probable calcium-binding protein CML41 OS=Arabidop... [more]
CML19_ORYSJ6.816e-1839.13Putative calcium-binding protein CML19 OS=Oryza sa... [more]
CML23_ORYSJ5.770e-1738.62Putative calcium-binding protein CML23 OS=Oryza sa... [more]
CML39_ARATH9.842e-1735.71Calcium-binding protein CML39 OS=Arabidopsis thali... [more]
CML38_ARATH1.679e-1635.51Calcium-binding protein CML38 OS=Arabidopsis thali... [more]
CML31_ORYSJ1.679e-1638.85Probable calcium-binding protein CML31 OS=Oryza sa... [more]
CML26_ARATH1.018e-1333.09Probable calcium-binding protein CML26 OS=Arabidop... [more]
CML25_ARATH1.018e-1334.07Probable calcium-binding protein CML25 OS=Arabidop... [more]
CML27_ARATH1.330e-1332.35Probable calcium-binding protein CML27 OS=Arabidop... [more]
CML15_ORYSJ1.737e-1330.41Probable calcium-binding protein CML15 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832883 ID=CF832883; Name=CF832883; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTACTATAAATTTATTTATACAAATAAATTATCTTTTA
TATATTAGGAAAACTATTTAGAGAGAGAGATGGTTATAATAATAAATTTA
TTTACACAACAACTTAATTCGAAAGTGGGCACGTAGGTAGCAAATAAATA
GTAATTAAGCCATCATTTGGGAAAACTCATGATAATCAAGAACTCCGTTG
CCATCAGTATCAAAGACTTGAATCATGGCAACACACTCGTCATAAGATTT
AGAATCGCCAAGGCGATTCAACATCCTTTGCAAACCTTTTGGAGTTATGC
ACCCTTTCTTCTCCAATTCAAACATCTCAAAGGCCTTCTTCAGATCCTCG
TCATCGCCATCGCCTCGATCGTCTTTGAGCAGCATCCTCGTGAAATCTTG
AAAATCCAATAAACTGTCGCCATCGGTGTCAAAATCATCAATCGCTGCTC
GAGCCTCTTCGTATGACATGTACTCACCAATGGAACCAAAGTAAGCCCTA
AGTTCGAGAGCCGAAATTTTCCCATCTCCATCACCATCAAAATGACGAAA
AACTTGCTTCAACTCATCTTCTTTTGGGATCTTTTTGGGTTCGCATGCAG
ACAAGGAGGAGTTTGGAGAGCTTAATGTTGTTGTTGTTGACGATGAAGAG
CTAAACTTTGACTTTGATCGACGACGATGAAGGCTTAACCCATGACCCTT
GTTAGAAAAGAACCACTTAGAATTAGATGGCTTAGAACCTGCAACCTTGT
TATCATCGGTTGCCATATGTTTTCCTTGTTAATGGATATGTCAATATATA
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