CF832888

Overview
NameCF832888
Unique NameCF832888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length364
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832888_ssr180 microsatellite CF832888_ssr180:180..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8490 contig Csv1_Contig8490:85..448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832888 vs. ExPASy Swiss-Prot
Match: PR1A1_ARATH (PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.189e-16
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:  212 MDWGNVTAKDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSR 349
            MDWGNVT  DL DALREVDWSSPPRP SEFFSRFTVP+S  KW+SR
Sbjct:    1 MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSR 46
[Close]
BLAST of CF832888 vs. ExPASy Swiss-Prot
Match: PR1A2_ARATH (PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.676e-13
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 2 
Query:  212 MDWGNVTAKDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSR 349
            MDW NV A+D+I+ALREV+WS+PPR   EFFSRF  PRS +KW SR
Sbjct:    1 MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSR 46
[Close]
BLAST of CF832888 vs. ExPASy Swiss-Prot
Match: PR1A3_ARATH (PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.752e-12
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 2 
Query:  212 MDWGNVTAKDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSR 349
            MDW +V A+D+I+ALREV+WS+ PR L+EFFSRF  PRS +KW SR
Sbjct:    1 MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSR 46
The following BLAST results are available for this feature:
BLAST of CF832888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PR1A1_ARATH1.189e-1682.61PRA1 family protein A1 OS=Arabidopsis thaliana GN=... [more]
PR1A2_ARATH4.676e-1367.39PRA1 family protein A2 OS=Arabidopsis thaliana GN=... [more]
PR1A3_ARATH6.752e-1265.22PRA1 family protein A3 OS=Arabidopsis thaliana GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02J22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832888 ID=CF832888; Name=CF832888; organism=Citrus sinensis; type=EST; length=364bp
CCGTTAAGTCCCTCTCTGGCTCACTGCACAAGTCCCCATTCAATTCAATT
CTCTTCATCACATCGCAGGAAACCCACAGCCACAGCCTCGACTCTCTCTT
AATCTGCCTAGGGTTTCGCGCTTCATTTTATTTTGCACAAAATAAATCGT
TTTCTAGGGTTTCGGAAGAGCGGAATATTATAATAATAATAACAATAGTA
GTAATCAAGCGATGGATTGGGGAAACGTAACAGCAAAAGATCTTATCGAC
GCGCTTCGTGAAGTTGACTGGTCGTCGCCACCGCGTCCTCTCTCCGAGTT
CTTCTCCAGGTTCACCGTTCCGAGATCCTCCGCCAAATGGAACAGCCGAT
GAAACAAGCAAGAG
back to top