CF832891

Overview
NameCF832891
Unique NameCF832891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1030 contig Csv1_Contig1030:391..1172. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832891 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = -1 
Query:  430 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 807
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CF832891 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = -1 
Query:  430 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 807
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CF832891 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = -1 
Query:  430 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 807
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CF832891 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = -1 
Query:  430 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 807
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CF832891 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = -1 
Query:  430 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 807
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CF832891 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = -1 
Query:  430 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 807
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CF832891 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = -1 
Query:  430 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 807
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CF832891 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = -1 
Query:  430 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 807
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CF832891 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = -1 
Query:  430 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 807
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CF832891 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 4.588e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = -1 
Query:  430 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 807
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of CF832891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_VITVI4.588e-65100.00Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC4.588e-65100.00Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]
H33_PINPS4.588e-65100.00Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ4.588e-65100.00Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI4.588e-65100.00Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO4.588e-65100.00Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA4.588e-65100.00Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE4.588e-65100.00Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU4.588e-65100.00Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI4.588e-65100.00Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832891 ID=CF832891; Name=CF832891; organism=Citrus sinensis; type=EST; length=822bp
TTTTTTTTTTTTTTTTTGGTGAAGAAACATCAATATTTTTTCTTATTATT
CAACAAAAACATTGAATCAATTTCATAAAAGAACCATAAATAACAAACTA
AACTTAGATTAGAAGCAAAATAATAGAGATGTTCAACACCACCACTATTG
TGGCAACAGGTATCCAAAAGAACACATAAAAGCCAGTCTCTTATGGCGAA
TTAAAATCCCCATCATCAACAAATAGACATTATAAAACACCACCAAAAAC
AAACCCAGATGATGACAAAAGCCATATTCTAATAACTACTGGAATCCTAC
CCCTATCTACCCCCACCAACCCCCACGTACAAATTAACACATTACAACTT
CCCCCTTCCCTTCCAGTCATTCAATTGAAGCAAGCAGCAATTACGCTTAA
GCACGCTCGCCACGGATCCTACGGGCAAGCTGTATGTCCTTGGGCATAAT
AGTGACACGCTTTGCATGAATGGCGCAGAGGTTAGTGTCCTCGAAGAGAC
CAACAAGGTAAGCCTCCGCTGCCTCCTGCAGGGCCAGTACTGCATGGCTC
TGGAAACGCAGATCAGTCTTAAAGTCCTGAGCAATTTCACGAACAAGTCT
CTGGAATGGGAGTTTCCTGATAAGCAGCTCGGTACTCTTCTGGTACTTGC
GAATTTCTCGAAGGGCGACGGTTCCAGGACGGTAACGATGAGGCTTCTTA
ACACCACCGGTGGTGGGCGCAGACTTACGGGCGGCCTTGGTAGCAAGTTG
CTTCCTAGGAGCCTTTCCTCCGGTTGACTTACGTGCAGTTTGCTTGGTAC
GGGCCATCTCTGAGTTTCTTCA
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