CF832893

Overview
NameCF832893
Unique NameCF832893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length325
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig709 contig Csv1_Contig709:202..526. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832893 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.869e-23
Identity = 49/59 (83.05%), Postives = 57/59 (96.61%), Query Frame = 2 
Query:    2 TTQLKKLMNAYCDIQSVELNSIAFLYDGRRLRGEQTPDDLEMENGDDIDAMLHQTGGML 178
            +TQLKKLMNAYCD QSV++N+IAFL+DGRRLRGEQTPD+LEME+GD+IDAMLHQTGG L
Sbjct:   40 STQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98
[Close]
BLAST of CF832893 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.278e-22
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = 2 
Query:    2 TTQLKKLMNAYCDIQSVELNSIAFLYDGRRLRGEQTPDDLEMENGDDIDAMLHQTGG 172
            +TQLKKLMNAYCD QSV++NSIAFL+DGRRLR EQTPD+L+ME+GD+IDAMLHQTGG
Sbjct:   37 STQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93
[Close]
BLAST of CF832893 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.397e-11
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 2 
Query:    2 TTQLKKLMNAYCDIQSVELNSIAFLYDGRRLRGEQTPDDLEMENGDDIDAMLHQTGG 172
            TT+  KLM  YC  Q   +NS+ FL DG R+R +QTP +L+ME+GD I+A+L Q GG
Sbjct:   55 TTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111
The following BLAST results are available for this feature:
BLAST of CF832893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SMT3_ORYSJ3.869e-2383.05Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
SMT3_ARATH4.278e-2282.46Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
PMT3_SCHPO3.397e-1152.63Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_02K01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832893 ID=CF832893; Name=CF832893; organism=Citrus sinensis; type=EST; length=325bp
AACCACCCAACTAAAGAAGCTTATGAATGCCTACTGTGATATACAATCTG
TGGAGCTGAACTCAATTGCCTTCTTGTATGATGGCCGCCGACTTCGAGGA
GAGCAAACCCCTGATGATCTGGAAATGGAAAATGGTGATGACATTGATGC
CATGCTGCACCAAACCGGAGGAATGCTGATGTTCTAATTATGTAATGCTC
CTTTGAGAGCTTATTACTATTATTAATGGAAAACTATTTATGGATGGATG
CAAGTTATGCACAGGCTCAAGATTGCGCATTTGTGATCTACACCGTTATG
TTTGGATCGAAAAAATAAAGAAAAA
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